Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Amir_1543 |
Symbol | |
ID | 8325727 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Actinosynnema mirum DSM 43827 |
Kingdom | Bacteria |
Replicon accession | NC_013093 |
Strand | - |
Start bp | 1701157 |
End bp | 1703268 |
Gene Length | 2112 bp |
Protein Length | 703 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 644942093 |
Product | 3-hydroxyacyl-CoA dehydrogenase NAD-binding |
Protein accession | YP_003099339 |
Protein GI | 256375679 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1250] 3-hydroxyacyl-CoA dehydrogenase |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | GTGACCGCGT TGACCCCCGA CGAGGCCAAG GCGCTGTTCC CCGACGAAGT CGTCACCAGC GCGCGCACCC GCCTGGTCGC GGTCCCCGGC CTGGACGGGC CGGTCGCCGT GATCACCATC GACAACGGCC ACGACCACAC CCGCCCGTCG ACCTTCGGGC CGCAGGGCCT GGTCAGCCTG GGCCTGGCGT TCGACGAGGC GGCGGCGGCG AACCCGGTGG CCATCGCGGT CACCGGCAAG CCGTTCGTGT TCGCCGTCGG CGCCGACCTG AGCGCCGTGG AGAAGGCCGG GTCGCGCGAG ACGGGCCTGA CCATCGGCGC GCTCGGCCAC GAGGTGTTCC GCAAGTTCAC CGACTCCACC GTCCCCACCT TCGCGTTCGT CAACGGCGCG GCGATGGGCG GCGGCCTGGA GCTGGCGCTG TCCTGCCACT ACCGGACGGT GTCCTCGAAC GCGGCGGCCA TCGCGCTGCC CGAGGTGTTC CTCGGCCTGT TCCCCGGCTG GGGCGGCACG CAGCTGCTGC CGAACCTGAT CGGCCCGGAC GCGGCCGTGA CGGTGATCTT CGAGAACGCG CTGAACCAGA ACCGGATGCT CAGCCCGGCG AAGGCCACCC GGCTCGGGAT CTTCGACACC GCGCTCGACT CCGCCGACTA CCTGGAGCAG TCGCTGCTCT GGCTGGCGAA GGTCGTGCGC GGCGAGGTGA CCCCGGAGCG CGAGGAGATC GACCGGGGCG CCGGCTGGGA CGCCGCGCTC GCCCGCGCCA AGGGCATCGT GCACGGCCGC ACCAAGGGCG CCGCGCCCGG CGCGCTCAAG GCCCTGGAGC TGCTGGAGCT GGCCCGCGAG AACGACCTCG ACCGGGGTTA CGCGGCCGAG ACCGAGGCGC TGGCCGACCT GGTCATGAGC GACGAGCTGC GGGCGGGCCT GTACTCGTTC AACCTCGTGC AGAAGCGCGC CAAGCGCCCC GCGGGGGCCC CGGACAAGTC GCTGGCCCGC AAGGTCACCA AGGTCGGCAT CGTCGGCGCG GGCCTGATGG CCTCGCAGAT GGCGCTGCTG TTCGCCCGAC GCCTGGAGGT GCCGGTCGTG CTGACCGACG TCGACCAGGC GCGCGTGGAC AAGGGCGTGG GCTACGTGCA CGCCGAGGTC GACAAGCTGC TGGGCAAGGG CCGGGTGTCG CAGGACAAGG CGAACCGGCT CAAGGCGCTG GTGTCCGGCT CGCTGGACAA GGCGGCGTTC GCCGACGCGG ACTTCGTGAT CGAGGCCGTG TTCGAGGACC TGGACGTCAA GAAGAAGGTC TTCGCCGAGG TCGAGGAGCA CGTCTCCGCC GAGGCGGTGC TGGCCACCAA CACCTCGTCG CTGTCGATCA CCGACATGGC GTCCGGGCTG AAGCACCCCG AGCGCGTGGT CGGCTTCCAC TTCTTCAACC CGGTCGCGGT CATGCCGCTG CTGGAGATCG TGCGGGCCGA GCGGACCGAC GACGCGACCC TCGCGACGGC GTTCGCGGTG GGCAAGCAGC TGAAGAAGTC GTCGGTGCTG GTCAAGGACG CGCCCGCGTT CGTGGTCAAC CGGCTGCTGA CCCGGTTCAT GGGCGAGGTG GTGCGCTCGA TCGACGAGGG CACCCCGTTC GAGGTGGCCG ACCGGGCGAC CGAGTCGCTG GGCCTGCCGA TGTCCCCGCT GGTGCTGCTG CAGCTGGTCG GGCCGCCGGT GGCGCTGCAC GTGGCCGAGA CGATGCACGG GGCGTTCCCC GAGCGGTTCG CGGTCAGCGA GAACATGAAG GCGTTCGTCG CGGCGGGCAA GGCGGCCGTG TGGCAGTGGG ACGCGACCGG CAAGCAGACC GTGGACCCCG AGGTCCAGGC GCTCTGGAAG GGCGGCGACG CCCCGCAGAC CGGCGAGGAG GTCGCCGCGC GGGCGCTGGA GGCGCTGGCC GAGGAGATCC GCACCATGCT CGACGAGGGC GTGGTCGCGG AGGCGCAGGA CATCGACCTG TGCATGATCC TGGGCGCGGG CTGGCCGTTC TGGCTGGGCG GCGTGACGCC GTACCTGGAC CGGACGGGCA TCTCGGAGAA GGTGACCGGC AAGCGGTTCC TGGCTCCGGG CATCGCCTCC GTCCCGGCCT GA
|
Protein sequence | MTALTPDEAK ALFPDEVVTS ARTRLVAVPG LDGPVAVITI DNGHDHTRPS TFGPQGLVSL GLAFDEAAAA NPVAIAVTGK PFVFAVGADL SAVEKAGSRE TGLTIGALGH EVFRKFTDST VPTFAFVNGA AMGGGLELAL SCHYRTVSSN AAAIALPEVF LGLFPGWGGT QLLPNLIGPD AAVTVIFENA LNQNRMLSPA KATRLGIFDT ALDSADYLEQ SLLWLAKVVR GEVTPEREEI DRGAGWDAAL ARAKGIVHGR TKGAAPGALK ALELLELARE NDLDRGYAAE TEALADLVMS DELRAGLYSF NLVQKRAKRP AGAPDKSLAR KVTKVGIVGA GLMASQMALL FARRLEVPVV LTDVDQARVD KGVGYVHAEV DKLLGKGRVS QDKANRLKAL VSGSLDKAAF ADADFVIEAV FEDLDVKKKV FAEVEEHVSA EAVLATNTSS LSITDMASGL KHPERVVGFH FFNPVAVMPL LEIVRAERTD DATLATAFAV GKQLKKSSVL VKDAPAFVVN RLLTRFMGEV VRSIDEGTPF EVADRATESL GLPMSPLVLL QLVGPPVALH VAETMHGAFP ERFAVSENMK AFVAAGKAAV WQWDATGKQT VDPEVQALWK GGDAPQTGEE VAARALEALA EEIRTMLDEG VVAEAQDIDL CMILGAGWPF WLGGVTPYLD RTGISEKVTG KRFLAPGIAS VPA
|
| |