| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_1328 |
|---|
| Symbol | |
|---|
| ID | 8325507 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Actinosynnema mirum DSM 43827 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013093 |
|---|
| Strand | - |
|---|
| Start bp | 1468569 |
|---|
| End bp | 1469750 |
|---|
| Gene Length | 1182 bp |
|---|
| Protein Length | 393 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 76% |
|---|
| IMG OID | 644941875 |
|---|
| Product | putative transcriptional regulator, PucR family |
|---|
| Protein accession | YP_003099126 |
|---|
| Protein GI | 256375466 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2508] Regulator of polyketide synthase expression |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.617934 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCCGTC CTGAAGGCCC ACCGCTGTCG ACCGCCACCC TGCGGAACCT GGAACGGGCC
TCCGGCGACC TCGCCTCCTC CACCGTCGCG GAGATGGAGC GCAGGCTCCC GTGGTTCCGG
CGGATGCCCG CCGACCAGCG CGCGAGCGTG CTCCTGCTGG TCCAGAACGG CGTCGCGGGC
TTCGTCGCCT GGCTCCAGGA CCTGCAACCG GCGGTCCGGC TCACCGCCGA GGCGTTCCGC
TCCGCCCCCA AGGACATCTC CCGCTGGGTG AGCCTGCGCC AGACCGTGGA GCTGGTGCGC
ATCGCGCTGG AGCTGTTCGA GCAGCGCCTC CCGGTGCTGG CCGCCGACGA CGCCGAGCAC
GCCCACCTGA CCGGCGCGGT GCTGCGCTAC GGGCGGGAGA TCGCGTTCTC CGCCGCCACC
TCGTACGCCG CCGCCGCCGA GGCGCGCGGC GCGTGGGACG CCCGGCTGGA GGCGCTGGTC
GTGGACGGGG TGGTGCGCGG CGACGCCGAG GAGTCGCTGC TGTCGCGGGC CAGCGCGCTC
GGCTGGGAAC CGGGCGCCCC GGCGACCGTG CTGGTCGGCA ACCCGCCGTC CGACGACCCG
CAGCAGGTGA TCTACGAGGT GCGCAGCCGG GCCGCGCGCA GCGGAAGGCA GGTGCTGCTG
AGCGTGCAGG GCTCCCGCCT GGTCCTGGTG CTGGGCGGCG ACACCGAGGC CGACGACGTG
CTCGGGCGCA TGGCGCAGGC CTTCGGCGAC GGGGCGGTCG TCGCGGGCCC GACCATGCCG
AGCATCGCCG AGGCGCACCG CAGCGCCGCC GACGCGCTGT CCGGGCTGCG CGCCGTGGTG
GGCTGGCCCG CCGCGCCGCG CCCGGTGCGC TCGCTGGACC TGCTGCCCGA GCGCGCGCTG
GCGGGCGACC CGGAGGCCGA GTGGCAGCTG GTGGACCGGA TCACCCGGCC GCTGGAGGAG
GCGGGCGGGG CGCTGCTGGA GACCGTGGAC ACGTTCCTGG AGGTCGGCGG CGTGCTGGAG
GCGTGCGCCC GCAAGCTGTT CGTGCACCCG AACACGGTGC GCTACCGGCT GCGCCGCGCC
ACCGAGCTGA CCGGGCGCAA CGCCAACGAC CCGAGGGACG CGCTGGTGCT GCGGATCGCG
CTGTCCGTCG GCCGCCTGGC CCGCGCGCGC GGCCTGTGGT GA
|
|---|
| Protein sequence | MTRPEGPPLS TATLRNLERA SGDLASSTVA EMERRLPWFR RMPADQRASV LLLVQNGVAG
FVAWLQDLQP AVRLTAEAFR SAPKDISRWV SLRQTVELVR IALELFEQRL PVLAADDAEH
AHLTGAVLRY GREIAFSAAT SYAAAAEARG AWDARLEALV VDGVVRGDAE ESLLSRASAL
GWEPGAPATV LVGNPPSDDP QQVIYEVRSR AARSGRQVLL SVQGSRLVLV LGGDTEADDV
LGRMAQAFGD GAVVAGPTMP SIAEAHRSAA DALSGLRAVV GWPAAPRPVR SLDLLPERAL
AGDPEAEWQL VDRITRPLEE AGGALLETVD TFLEVGGVLE ACARKLFVHP NTVRYRLRRA
TELTGRNAND PRDALVLRIA LSVGRLARAR GLW
|
|---|
| |