Gene Amir_1306 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAmir_1306 
Symbol 
ID8325485 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameActinosynnema mirum DSM 43827 
KingdomBacteria 
Replicon accessionNC_013093 
Strand
Start bp1441947 
End bp1444025 
Gene Length2079 bp 
Protein Length692 aa 
Translation table11 
GC content77% 
IMG OID644941853 
Productdiguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 
Protein accessionYP_003099104 
Protein GI256375444 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00348549 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGGTCGGCG CGGGTAGCGC GGACCCGGCC GCCGGGCGCC GCGAGCTGGC GCGCGCGTGG 
GCGCGGGAGC TGAAGGGCGC CGGGCGCGGC CCGATGTCGC CGGTGGAGCT GGAGCGGTTC
CTGCTGGAGC TGGTGGAGCT GCTGCTGGAC GTGCTGGGAG CGCTTCCGTT CCGGGCGGCG
GGCGCGGCCG AGGCGGGGCG GCGGCTGGTC GGGGCGCGGT TCACCGGCGC GGAGGCGCTG
CGGCGCACCG TGCTGCTGCT CGGGCGGTCG CTGGCCGAGC ACGCGGACCG ACCTGGGCCG
GACAGCGCGA GATCGGACAG CGCGGGGCCG GGGTTGGCCG AGCGGGTGGT GGCGGTGCTG
GCCGAGCTGA GCGCCGGGTT CGCGGAGGCG CTGCGGCTGG ACGCGCTGGC GCAGCAGGAG
GAGGTCCGCC TGGCGCTGCT GGCCGCGCGG CAGCGGGTGG AGCGGGTGCT GCGGCTGAGC
GAGGCCCGGT TCCGGGAAGC GTTCGACTCC TCGGCGCTGG GCATCGCGAT CACCGACCTG
CGCGGGATGT GCGTGCGCGC CAACGACTCC CTGGCGCGGA TGCTGGACGA GCCGAAGGAG
GTGCTGGTCG GCCGCAGGCT GGTGGAGCTG TTCCACCCGG ACGACGCGGC GCCGCTGGGC
GCGGCCTACC GGGCGGTGGC GGTGGGGCGG GTCGACCAGT TCCGGGAGCA GCGCAGGCTC
GTGCGGGTGG ACGGCGACCC GGTGTGGGTG CACCTGGCGG TGTCGCTGCT GCGCGACGAG
GACGGCAGCC CGGCGTTCCA CGTGACGATG GCCGAGGACG TCAGCGAGCT GCACCTGCTG
CGCCGCAACC TGGACCACCA GCTGCTGCAC GACGCGCTCA CCGGCCTGTC CAACCGCCAG
CACTTCACCA CCCGGCTGGA GGTGATGCTG AAGGCGTCGC GGGCCGGGAT CACGCTGTAC
CAGCTGGACC TGGACGCGTT CTCGGTGGTG AACAACGGGC TGGGGCACGC CACCGGCGAC
CGCGTGCTGG TGGAGGTGGC GCACCGGCTG CGCGGGGTGG TGGAGCGCGA GGAGGCGCTG
GTCGCCCGGA TCGGCGGGGA CGAGTTCGCG CTGGTGGTGG ACAACTCGCC GACGACGCCG
AGGGTGCCCG CGATGGTGGA GCGGGTGAAC GCGGCGCTGG CCGGGCCGCT GGAGTCCGGT
GTGGAGCTGT CGGCGGCGAT CGGCGTGGTG GACCGCCCGG CGTCGGACTG GCCGGTCGTG
GACCTGCTGC GGGCGGCGGA CTCGACGGTG CGGCGGGCGA AGTCGCTGGG CACCCGGCAG
TGGCTGCCGT ACGACCGGGC CGAGGAGGCG CGGTCGCGGG AGCTGCTGGG CCGGGCGGCG
CGGCTGCCGC GCGCGCTGGC GGCGGACGAG GTCGAGGTGG AGTACCAGCC GGTGGTGGAC
CTGGCGACGG GCGAGCGGAC CGGGCTGCTG GCGCGGGTGC GCTGGGACGG GCTGGGGCAC
GAGGAGTGCG CGGAGCTGGC GGAGGTGGGC GGCTCGTCGC CCGCGCTGGG CCTGTGGGCG
CTGGAGCGGG CGGCGCGGGA GGCGGCGACC TGGGCGGGCT CGGTGCCGCT GCACGTGGAG
CTGTCGCCCG CGCTGACCAC GGACCCGGAC CTGGTGGCGT CGGTGTCGCG GGTGCTGGCG
GAGACCGGGC TGGCGCCGGG CGGGCTGAGG CTGCGGCTGC ACACGCGGGC GGCGCTGGTC
GCGGAGGACG ACAACGCGCA GGTGCTGCGG GACAACGGCG TGACGACCGG TCTGTGGGCG
TTCAACGGCG GTCAGGCGGA GCTGTCCCTG GTGGACGCGC TGGAGGTGGA CGCGCTGGTG
TTCGAGCCCG CCGTGGCGCG CCGGTTGTCC GGGCAGGCGG TGGAGGGGCT GCTGCACCGG
GCGATGGACG GGCTGGCGGC GGTGGTGCGG TCGGCCGGGG TGGAGATCGT GGCGCCGTGC
GTGGACTCGG CGCAGGACCT GGCGTGGTGG CGGGGCGCGG GCGCGACGAG CGGGTTCGGC
GAGCAGTTCG GCGGGCCGGT CGCGGGGCAC GAGCTGTGA
 
Protein sequence
MVGAGSADPA AGRRELARAW ARELKGAGRG PMSPVELERF LLELVELLLD VLGALPFRAA 
GAAEAGRRLV GARFTGAEAL RRTVLLLGRS LAEHADRPGP DSARSDSAGP GLAERVVAVL
AELSAGFAEA LRLDALAQQE EVRLALLAAR QRVERVLRLS EARFREAFDS SALGIAITDL
RGMCVRANDS LARMLDEPKE VLVGRRLVEL FHPDDAAPLG AAYRAVAVGR VDQFREQRRL
VRVDGDPVWV HLAVSLLRDE DGSPAFHVTM AEDVSELHLL RRNLDHQLLH DALTGLSNRQ
HFTTRLEVML KASRAGITLY QLDLDAFSVV NNGLGHATGD RVLVEVAHRL RGVVEREEAL
VARIGGDEFA LVVDNSPTTP RVPAMVERVN AALAGPLESG VELSAAIGVV DRPASDWPVV
DLLRAADSTV RRAKSLGTRQ WLPYDRAEEA RSRELLGRAA RLPRALAADE VEVEYQPVVD
LATGERTGLL ARVRWDGLGH EECAELAEVG GSSPALGLWA LERAAREAAT WAGSVPLHVE
LSPALTTDPD LVASVSRVLA ETGLAPGGLR LRLHTRAALV AEDDNAQVLR DNGVTTGLWA
FNGGQAELSL VDALEVDALV FEPAVARRLS GQAVEGLLHR AMDGLAAVVR SAGVEIVAPC
VDSAQDLAWW RGAGATSGFG EQFGGPVAGH EL