Gene Amir_1274 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAmir_1274 
Symbol 
ID8325451 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameActinosynnema mirum DSM 43827 
KingdomBacteria 
Replicon accessionNC_013093 
Strand- 
Start bp1412633 
End bp1413622 
Gene Length990 bp 
Protein Length329 aa 
Translation table11 
GC content77% 
IMG OID644941819 
ProductRNA polymerase, sigma-24 subunit, ECF subfamily 
Protein accessionYP_003099072 
Protein GI256375412 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.883665 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGCTCGTGA CCACCACGGG GGACGGCGCG GTTCCGGACG GCGCGGACCT GGCGCTGGTG 
CTCCAGGAGC ACCGCACGCA CCTGGTGGGG GTGGCGTACC GGCTGACCGG CAGCGTCGCG 
GACGCCGAGG ACGCGGTGCA GGAGGCCTGG CTGCGGCTGT CGGGGCTGTC CGAGCGGGCT 
CGGGCGGAGA TCCGGGAGCC GCGCGCGTGG CTGACCACCG TGGTGGGCCG GGTGTGCCTG 
GACCGGTTGC GGTCGGCGGC GGTGCGGCGG GAGCGGTACG TGGGCAGCTG GCTGCCCGAG 
CCGCTGGTGG GCGAGGTCGT GGACGAGCCG CTGGACGCGG TGGTGCGCGA CGACGGGGTG 
CGGATGGCCG CGCTGGTCGT GCTGGACCGG TTGACGCCCG AGCAGCGGGT GGCGTTCGTG 
CTGCACGACG CGTTCGGGCT GCCGTTCGAC GAGATCGCGG CGGTGCTGGG CGTGGAGGTC 
GCGGCGGCGC GGCAGCACGC GTCCAGGGGC AGGCGCGCGG CGGCTGCGGC CGACCCGCCG 
CCGAGGGTGG CGCTGGCCGA GCAGCGCGAG GTGCTGGGGC GGTTCGTGGC GGCGCTGGCG 
GCCGGTGACG TGCAGGCCGT GCTGAGCCTG CTGCACCCGG ACGCGCTGGT GATCAGCGAC 
GGCGGCGGCA AGGCGCGCGC GGCGATCAAC CAGGTCGTCG GCGCGGACCG GGTGGCGCGG 
TTCATGGTCG GGCTCGCGCT CAAGCACGGC GGGCTGGGCG ACGCGCGGCC GGTGCTGGTG 
AACGGGGACC TGGGGCTGCT GCGGCGGGCG AGCCCGGAGG TGGCGCGGCG GATCACGTCG 
GTGGTGGTGC GGGACGGGCT GGTCGTGGCG CTCTACGACA TCTCGAACCC GGACAAGCTC 
GGGCACGTGG ACTTCGACGG GCCCGACTTC GACGGGCCCG CCTCCGACGA ACCTGGCTCC 
GACGGGCCGC GGGTCGCCGA GGCGGGCTGA
 
Protein sequence
MLVTTTGDGA VPDGADLALV LQEHRTHLVG VAYRLTGSVA DAEDAVQEAW LRLSGLSERA 
RAEIREPRAW LTTVVGRVCL DRLRSAAVRR ERYVGSWLPE PLVGEVVDEP LDAVVRDDGV 
RMAALVVLDR LTPEQRVAFV LHDAFGLPFD EIAAVLGVEV AAARQHASRG RRAAAAADPP 
PRVALAEQRE VLGRFVAALA AGDVQAVLSL LHPDALVISD GGGKARAAIN QVVGADRVAR 
FMVGLALKHG GLGDARPVLV NGDLGLLRRA SPEVARRITS VVVRDGLVVA LYDISNPDKL 
GHVDFDGPDF DGPASDEPGS DGPRVAEAG