Gene Amir_1177 details

Gene Information

• Locus tag: Amir_1177
• ID: 8325354
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Actinosynnema mirum DSM 43827
• Kingdom: Bacteria
• Replicon accession: NC_013093
• Strand: +
• Start bp: 1315762
• End bp: 1316313
• Gene Length: 552 bp
• Protein Length: 183 aa
• Translation table: 11
• GC content: 70%
• IMG OID: 644941724
• Product: RNA polymerase, sigma-24 subunit, ECF subfamily
• Protein accession: YP_003098977
• Protein GI: 256375317
• COG category: [K] Transcription
• COG ID: [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog
• TIGRFAM ID: [TIGR02937] RNA polymerase sigma factor, sigma-70 family

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 0.100003
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAATTCAC CGGGCGGAAC GCGGGTGGAG CCCCGGTCGG GCGCCGCCGC GCGGAGCAGG 
GCCGAGGAGT TGGTGACGAC CCTCTACGCG CAGTTCGAGG GGGTCCTGCT GGCCCACGTG 
CTCAAGCTGA CCGGCAACGA CCGGCAGTGG GCGGAGGACG TCGTCCAGGA GACCCTCATC 
CGGGCGTGGC GCAACGCGGA AACGCTGGTC AGCGACCCGA GGATGCTGCG GGGCTGGCTG 
CTGACGGTGT CCCGCCGGAT CGTGATCGAC GACTGGCGCG GGCGTCGCGC CAGACCCGTG 
GAGGTGGAGC TGACCGGCGA CGACGTCGCC CTGGAGCCCG ACCGGACCGA GCAGGGGCTG 
TCCCGCATGG TGCTCGCCGA TCTCATCGGG AAGCTCGGTG CCGAGCACCG GGAAGCGATC 
TGCGAGACCT ACGTGCGCGG CCGGACCGTC CGCGAGGCGG CGGTCGTGCT GGGCATTCCC 
GAAGGGACCG TGAAGTCCCG CGTCTACCAC GCCATGAAGA TCCTGCGCCG ATCAATGGAG 
GAGTCGCGCT GA 

 

Protein sequence

MNSPGGTRVE PRSGAAARSR AEELVTTLYA QFEGVLLAHV LKLTGNDRQW AEDVVQETLI 
RAWRNAETLV SDPRMLRGWL LTVSRRIVID DWRGRRARPV EVELTGDDVA LEPDRTEQGL 
SRMVLADLIG KLGAEHREAI CETYVRGRTV REAAVVLGIP EGTVKSRVYH AMKILRRSME 
ESR