| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_1066 |
|---|
| Symbol | |
|---|
| ID | 8325240 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Actinosynnema mirum DSM 43827 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013093 |
|---|
| Strand | - |
|---|
| Start bp | 1183493 |
|---|
| End bp | 1185175 |
|---|
| Gene Length | 1683 bp |
|---|
| Protein Length | 560 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 76% |
|---|
| IMG OID | 644941612 |
|---|
| Product | AMP-dependent synthetase and ligase |
|---|
| Protein accession | YP_003098868 |
|---|
| Protein GI | 256375208 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGCACCT ACTCGGCAGC ACGGGCGCTG GCGACCCTGG TCCGCGCGGG CGTGGTGCGC
CCCATGCGGC CGGACCGGTT GCTCGGCGTG CTCGGCGCGT ACCTGCGCTG GCGCGTCACC
CTGCCCTTCG GCTACGCCAC CGGCGCGGCG AGGCACCCCG ACCGGACCGC GCTGGTGGAC
GACCTCGGCG CGCTGACCTA CGCCGAGGTC GACCTGCGCA CGACCCGGCT CGCGGCGGGG
CTCGCCGCGC TCGGCGTGCG CGGTGACCAG CGGGTCGCCG TGCTGTGCCG CAACCACCGG
GGGTTCGTGG AGACCGTCAC GGCGTGCGCG AAGCTCGGTG CCGACGTGGT CCTGCTCAAC
AGCGGGTTGA GCCCGGCGCG GCTCGTGGCG GTGCTGCGGG AGCAGGAGCC GGTGGCACTG
GTCGCCGACG CCGAGTTCGA CGGAGCGCTG CGCGACGCGC CCAGCGGGAT CATCCGCGTC
ACGGCCTGGC CGGATGACGG TGAGAACGTG GGCAGAAATG CGCAGGCCGA GCAGGCGTGC
GGAAGTGCGC GAGCCGGGCA CGTGGGCGGG CGTGCGGAGG TCGGTGAAGC GGCGGCGTCA
GCCTGCCTGC CCGGCGGAAC CGGCAGCCAC CCCCGCACCA CCCTCGACGA CCTCCGCGCC
ACCCCCACAC CCCTCCCCGC CCGCACGAGC CGCAGTCACG TCATCGTGCT CACCTCCGGC
ACCTCGGGTC CCGCGAAGGG CGCCCGTCGC CCCGAGCCGC CGAGTCTCGC GCCCGCCGCG
GCGCTGTTCT CGCGCATCCC CCTGCGGCAC GGCGACGTCT GCGCGATCCC CGCCCCGCTG
TTCCACACCT GGGGCTTCGC CGCGTTCCAG CTCGCCCTCG TGCTCGGCGG CACGCTCGTC
CTGCGCCGCC ACCCGACCCC CGAAGCCCTG GCCGAGGACC TGCGCGGGTG CGACGCCCTG
TTCACCGTCC CCGTCCAGCT CCAGCGCCTC CTGGAGGTGA ACGACCCCCT CCCCTCCCCC
AGGGTGATCG CGTCCAGCGG TTCCGCGCTG CCGCCGCGCG TGGTCCGGGA CTGCCTGCGC
CGCACCGGCC CCGCGCTGCA CAACCTCTAC GGCTCCACCG AGGTCTCCTG GGTCACCGTC
GCCCGCCCGG ACGAGCTGGC CGCGCACCCG ACCACCGCCG GGAAGCCACC GCCCGGCACC
GTCCTGGAGA TCCTCGACGA GCACGGCGAC CCCGTTCCCC CAGGCGGGAC CGGCCGGATC
TTCGCGGGCA ACGCCATGCT GTTCGACGGC TACACCCACG CCGAGGGCCG GGACCGGGTG
CGCGGGCTGC TGCCCACCGG GGACCTCGGC CGGGTCGTCG ACGGGCTGCT GTTCGTCGTC
GGCCGGGACG ACGAGATGGT CGTCTCCGGC GGCGAGAACG TCCACCCCTC GGCCGTCGAG
GACGTGATCT CCGCTATGCC CGGCGTGCGC GAGGTGGCCG TGGTGGGCGT GCCGGACGAG
CGGTTCGGGC AGCGGCTGGT GGCCCACGTG GTCAAGGACG ACGACGGCCC GGACGAGGAG
GCGGTGCTGG CGCGGGTGCG GGCGGAGCTC GCCCGGTTCG CCGTGCCGCG CGCCGTCGTC
TTCCGCCCGG AACTGCCCCG CAACGCCACC GGCAAGGTCC TCAAGCGCGA ACTCGGAGCG
TGA
|
|---|
| Protein sequence | MGTYSAARAL ATLVRAGVVR PMRPDRLLGV LGAYLRWRVT LPFGYATGAA RHPDRTALVD
DLGALTYAEV DLRTTRLAAG LAALGVRGDQ RVAVLCRNHR GFVETVTACA KLGADVVLLN
SGLSPARLVA VLREQEPVAL VADAEFDGAL RDAPSGIIRV TAWPDDGENV GRNAQAEQAC
GSARAGHVGG RAEVGEAAAS ACLPGGTGSH PRTTLDDLRA TPTPLPARTS RSHVIVLTSG
TSGPAKGARR PEPPSLAPAA ALFSRIPLRH GDVCAIPAPL FHTWGFAAFQ LALVLGGTLV
LRRHPTPEAL AEDLRGCDAL FTVPVQLQRL LEVNDPLPSP RVIASSGSAL PPRVVRDCLR
RTGPALHNLY GSTEVSWVTV ARPDELAAHP TTAGKPPPGT VLEILDEHGD PVPPGGTGRI
FAGNAMLFDG YTHAEGRDRV RGLLPTGDLG RVVDGLLFVV GRDDEMVVSG GENVHPSAVE
DVISAMPGVR EVAVVGVPDE RFGQRLVAHV VKDDDGPDEE AVLARVRAEL ARFAVPRAVV
FRPELPRNAT GKVLKRELGA
|
|---|
| |