| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_0924 |
|---|
| Symbol | |
|---|
| ID | 8325090 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Actinosynnema mirum DSM 43827 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013093 |
|---|
| Strand | + |
|---|
| Start bp | 1026134 |
|---|
| End bp | 1027333 |
|---|
| Gene Length | 1200 bp |
|---|
| Protein Length | 399 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 644941467 |
|---|
| Product | integrase family protein |
|---|
| Protein accession | YP_003098730 |
|---|
| Protein GI | 256375070 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4974] Site-specific recombinase XerD |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGCCACG TCCAAGACCG CTGGTGGACT GTTCGAGACG GTCAGCGGGA GAAGACAGCG
CAGCACGGCA GGGGAATGCG CTACAAAGTC CGGTTCACCG GTCCGGACGG TCGGGAGCGC
TCCAAGGCGT TCCCAGACCG GCAGAAGAAG CGCGCTGACG ACTTCCTGCA CGAAATGGAG
AACGACAAGA ACAAGGGCAC GTACCTCGAC CCCGACGCCG GGAAGATCAC CTTCTGCGAC
TACGCGGAGC GCCACTGGAT CAACGCCCGA ACCTTTGACG AGTCCACCCG TGAGGGTGTG
GAGTTCCGGC TCAAGCTGCA CGTATACCCG TACTTCGGTG ACACGGAGCT GCGGCTCATC
CAACCTTCGA CCATCCAGGC GTGGGACCGG AAGCTCCAGC AGAAGGGGCT AGCTGAGACC
TACCGTAGGG GAATCTTCGC CAACGTTTCG GCAATCTTCA CCGCTGCCAT CGATGACGAG
CGGCTGCGCA GGAACCCCTG CAACGGGAAA TCGGTCGTCA AGCCTCGTGG CGAATACCCG
AAGATCGTGC CCTGGCCCGA ATCGCGGGTG CACTCGGTCC GAACTGAACT GGGGGAGAGC
TACCGCATCG CCGTCAACCT CGGTGCTGGC TGCGGCCTCC GGCAGGGAGA GGTTTTCGGT
TTCTCCGCAG ACGATGTAGA CGAATCAGAA GGCGTCATCC ACGTCCTGCG CCAGGTCAAG
ATCGTGCGCG GGAAGATGGT CTTCGCTCCG CCGAAGCACG GCAGGAGTCG TGACGTTCCC
CTGGCACCCA GCGTCGCCCA GGCCCTCGAA GCCCACACGA AGCGGTTCCC TCCGCTCCCG
GTCACGCTCC CGTGGCAAGT GCCCGAGGGC AAGCCCGTGA CCGTGCCCCT GATGATCTAC
ACCAGGGAGG CGAAGCAGCT CTACCGGCAC TCGTTCAACC ACCACGTCTG GAAGCCCGCC
CTGCGCGCTG CCGGGGTGGC GGAGCCGGGC AGGGCGGAGG GCTTCCACGC GCTCAGGCAC
TTCTACGCCT CGTCGCTCCT GGACGAGGGC GTGAGCATCC GCGCGCTCGC CGAGTACCTG
GGGCACGGCG ACCCCGCGTT CACCCTGCGG GTCTACACGC ACCTGATGCC CGCGAGCCAC
GAGCGGACGC GGGCGGCCAT AGACAAGGTG TTCAGTCAGC CGGGTGAAGC GGCGGCATGA
|
|---|
| Protein sequence | MGHVQDRWWT VRDGQREKTA QHGRGMRYKV RFTGPDGRER SKAFPDRQKK RADDFLHEME
NDKNKGTYLD PDAGKITFCD YAERHWINAR TFDESTREGV EFRLKLHVYP YFGDTELRLI
QPSTIQAWDR KLQQKGLAET YRRGIFANVS AIFTAAIDDE RLRRNPCNGK SVVKPRGEYP
KIVPWPESRV HSVRTELGES YRIAVNLGAG CGLRQGEVFG FSADDVDESE GVIHVLRQVK
IVRGKMVFAP PKHGRSRDVP LAPSVAQALE AHTKRFPPLP VTLPWQVPEG KPVTVPLMIY
TREAKQLYRH SFNHHVWKPA LRAAGVAEPG RAEGFHALRH FYASSLLDEG VSIRALAEYL
GHGDPAFTLR VYTHLMPASH ERTRAAIDKV FSQPGEAAA
|
|---|
| |