Gene Amir_0906 details

Gene Information

• Locus tag: Amir_0906
• Symbol: lysS
• ID: 8325070
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Actinosynnema mirum DSM 43827
• Kingdom: Bacteria
• Replicon accession: NC_013093
• Strand: +
• Start bp: 995843
• End bp: 999127
• Gene Length: 3285 bp
• Protein Length: 1094 aa
• Translation table: 11
• GC content: 75%
• IMG OID: 644941447
• Product: lysyl-tRNA synthetase
• Protein accession: YP_003098712
• Protein GI: 256375052
• COG category: [J] Translation, ribosomal structure and biogenesis; [S] Function unknown
• COG ID: [COG1190] Lysyl-tRNA synthetase (class II); [COG2898] Uncharacterized conserved protein
• TIGRFAM ID: [TIGR00499] lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 0.527316
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGGCGGTTG CCGGGTGGAA GTGGCGGGCG GCGGGGGTCG TCGCCACGGT CGTGCAGGTC 
TCCGCGCTGG CCTCCCTGGT GCTGCTGCTG TGGGCCGAGG GCACGACCCT CGGCGACGTC 
ATCTTCTTCT CCGGCTACGC CCTCGGCCTG CCGGTCGAGG CGAACCTGTT CATCGTCCTG 
GTCCTGGTGG TCCTCGGCGC GGCGCTGCGC GCCCGCAAGC GCGCGGCCCT GTGGGCCCTG 
CTGCTCACCG AGGCGCTCGG CCTCGCCTGG AACCTGGCCG TGCTGCTCCT GCTCGCCGTC 
GCCCCCGACG TGCCGGCGTC GGGGGAGCAG GTGGACTGGC GGCGCGCGCT GGGCTTCCTG 
GGCGGCGGCG CCCTCACCGC CCTGGTCATC ATCGCCTTCC TGCTGGCGAT CCGGGAGGCG 
TTCCCCGCCG AGCTGGCCCC CGGCGCCTGG CGCAAGGCGC TGGCCGCGTT CATCGTCGGC 
CTCGCCGCCG CCGCCACCGC CGGGTTCCTG CTCACCGAGG TCTTCCCCGG CTCCCTCCGC 
GACCAGGGCG AGATGCTGGT CTGGGCGGCC AACCAGGTCT CCGGCGAGGT GGTGCCGCTG 
CGCCGCGCCC TGTCCGGCGA GGGCCCGGCC TGGCTGAGCG TGCTGCTCGG CGTCACCGGC 
ACGCTCGTCG CGATCTTCGC CCTGTACCTG TTCTTCCGGG GCGAGCGCTC CAGCCGGTGG 
ATCAACGTCG ACGAGGAGCT CACCCTGCGC CGCCTGCTGG CCGCCCACGG CGAGCCGGAC 
TCGCTCGGCT ACTTCGCCAC CCGCCGCGAC AAGAGCGCCG TGCTCTCCCC GGACGGCCGC 
GCCGCGCTGA CCTACCGGGT GCTCGCGGGC ACCACCCTGG CCAGCGGCGA CCCGGTCGGC 
GACGAGGACT CCTGGCGGCA GGCGGTGCGG GCCTGGCTCG ACGAGGCCCG CCGGTACGGC 
TGGCGCGCGG GCGTCCTCGG GGCCAGCGAG CGCGGCGCCC GCGCCTACGC GGCCGAGGGC 
CTCAAGGCGC TGGAGATCGG CGACGAGGCC GTGCTGGACG TGCGCGAGTT CAGCCTCGCC 
GGACCGGAGC GGCGCGCGGT CCGGCAGGCG GTCAGCCGAG TGGAGCGCGC CGGGTACACC 
GCGCGGGTGC GCAGGCACGC CGAGATCCCC GCCGACGAGA TGGCCGGGCT GCTCGACCTG 
GCCCAGCGGT GGCGCGGCGC GCAGACCGAG CGCGGCTTCT CCATGGCGCT CGGCAGGCTC 
GGCGACGAGT CCGACGGCCG GTGCGCGATG GTCGAGGCCT ACGACGCGGA CGGCGCGCTG 
CGCGGGCTGC TCTCGTTCGT GCCGTGGGGC AGGCGCGGGC TGTCCCTCGA CCTGATGCGG 
CGCGACCGGA CCGCCGAGAA CGGGCTCAAC GAGTTCATGG TCGCCGAGCT GGTCGCCGCC 
GCCGGACGGC TGGGCGTGCA GCGGGTGTCG CTGAACTTCG CCATGTTCCG CGCGGTGTTC 
GAGGAGGGCG AGAAGCTCGG GGCCGGACCG GTGCTGCGGG CCTGGCGCGG CGTCCTCGGC 
CTGGCCTCCC GGTTCCTGCA GCTGGAGTCC CTGTACCGCT CCAACGCCAA GTACGGCCCC 
GACTGGCAGC CCCGCTACCT CTGCTACTCG GGCGTGCGGA GCCTGCCGAG GGTGAGCGTC 
GCGGCGGGCG TCGCCGAGGG CTTCGTGCCG AACCTGCGCT CCCTGCTCAA GCGCGGCTCC 
CGCCGCCGGG GCCTGGACGG GGCCACCACG TCCGGCCGCT GGTTCGCCGA CGCCGTCCGC 
GAGATCGAGG CCACCCGCCC CGAACCGGCC CGCGCCCGCC GCCCCGAGCA GGTCAGGGTC 
CGCATGGCCA AGCTCGACCT GCTGCGCGCC GCGGGCCGCG ACCCGTACCC CGTCGGCTAC 
GACCGCGACT GCCCCGTCGC CGAGGTCGAG TCCCGGTTCG GGCAGGTCGT CGCGATCACC 
GGCCGGGTCG TGGCGCTGCG CGAGCTGGGC GGCCTGTGCT TCGCCCGCGT CCGCGACTGG 
ACCGGCGAGG TGCAGGTCAT GCTGGACGCC GCCACCACCG AGGACCTGCA CCTGTGGAAG 
TCCGGCGTCG ACCTGGGCGA CCACGTCGGC GCGCGCGGCG AGGTCGTGCG CTCCCGGCGC 
GGCGAGCTGT CCGTGCTGGT CGCCGACTGG GCGATCACCG CCAAGTGCCT GCACCCGCTG 
CCCGACCGCC GCGCGGGCCT GGCCGACCCG GAGGCGCGGG TCCGCAAGCG CTACCTGGAC 
CTGGCGGTCA ACCCCGACTC GGCCGCGATG CTGCGCACCC GCAGCGCCGT CGTGCGCGCC 
GTCCGGGACT TCCTGCACGA CCGGGGCTAC CTGGAGGTCG AGACCCCGAT GCTCCAGACC 
GTGCACGGCG GGGCCAACGC GCGGCCGTTC GTCACCCACA TCAACGCCTA CGACACCCGC 
ATGTACCTGC GGATCGCGCC CGAGCTGTAC CTGAAGCGGT TGTGCGTGGC GGGCGTGGAC 
CGGGTGTTCG AGCTGAACCG GAACTTCCGC AACGAGGGCG CCGACGCCAC CCACAACCCG 
GAGTTCACCA TGCTGGAGGC GTACCAGGCG TACGCCGACT ACCGGGTGAT GCTGGACCTG 
GTGCGGGAGC TGGTGCAGCA CGCCGCGGTG GCCGCGCACG GCAGGCAGGT CGCGGTCCGC 
GACGGCGCGG AGGTCGACAT CTCGGGTGAG TGGCCGGTGG TGCCGGTGCA CGCGGCCGTG 
TCCACCGCGC TCGGCGTGCA GGTCGGCCCG GACCTGCCGC TGGACGAGCT GCGCGCCGCG 
CTGGTCGCCG GGGGCGTGCC GCTGCCGGAG GACCTGGAGG CCGACCACGG GACGCTGGTG 
CTGCGCGCCT ACGACCACCT CGTGGAGCCC GCCACGACCG CCCCGACCTT CTACACCGAC 
TTCCCCACCT CGGTGTCCCC GCTGACCAGG GAGCACCGCG CCGACCCCCG GCTGGCCGAG 
CGCTGGGACC TGGTCGCGTT CGGCGCGGAG GTCGGCACCG CCTACTCCGA GCTGACCGAC 
CCGGTCGAGC AGCGCCGCAG GCTGGAGGCC CAGTCGCTCA AGGCCGCCAG CGGCGACGTC 
GAGGCGATGG AGCTGGACGA GGACTTCCTG GCCGCGCTGG AGCACGGCAT GGCCCCCACC 
GGCGGCCTTG GCCTGGGCGT GGACCGCCTG CTGATGATGC TCACCGGGGC GAGCATCCGG 
CAGACGGTCC TGTTCCCGTT CGTCCGCCCC GGGCCGAAGT CCTGA 

 

Protein sequence

MAVAGWKWRA AGVVATVVQV SALASLVLLL WAEGTTLGDV IFFSGYALGL PVEANLFIVL 
VLVVLGAALR ARKRAALWAL LLTEALGLAW NLAVLLLLAV APDVPASGEQ VDWRRALGFL 
GGGALTALVI IAFLLAIREA FPAELAPGAW RKALAAFIVG LAAAATAGFL LTEVFPGSLR 
DQGEMLVWAA NQVSGEVVPL RRALSGEGPA WLSVLLGVTG TLVAIFALYL FFRGERSSRW 
INVDEELTLR RLLAAHGEPD SLGYFATRRD KSAVLSPDGR AALTYRVLAG TTLASGDPVG 
DEDSWRQAVR AWLDEARRYG WRAGVLGASE RGARAYAAEG LKALEIGDEA VLDVREFSLA 
GPERRAVRQA VSRVERAGYT ARVRRHAEIP ADEMAGLLDL AQRWRGAQTE RGFSMALGRL 
GDESDGRCAM VEAYDADGAL RGLLSFVPWG RRGLSLDLMR RDRTAENGLN EFMVAELVAA 
AGRLGVQRVS LNFAMFRAVF EEGEKLGAGP VLRAWRGVLG LASRFLQLES LYRSNAKYGP 
DWQPRYLCYS GVRSLPRVSV AAGVAEGFVP NLRSLLKRGS RRRGLDGATT SGRWFADAVR 
EIEATRPEPA RARRPEQVRV RMAKLDLLRA AGRDPYPVGY DRDCPVAEVE SRFGQVVAIT 
GRVVALRELG GLCFARVRDW TGEVQVMLDA ATTEDLHLWK SGVDLGDHVG ARGEVVRSRR 
GELSVLVADW AITAKCLHPL PDRRAGLADP EARVRKRYLD LAVNPDSAAM LRTRSAVVRA 
VRDFLHDRGY LEVETPMLQT VHGGANARPF VTHINAYDTR MYLRIAPELY LKRLCVAGVD 
RVFELNRNFR NEGADATHNP EFTMLEAYQA YADYRVMLDL VRELVQHAAV AAHGRQVAVR 
DGAEVDISGE WPVVPVHAAV STALGVQVGP DLPLDELRAA LVAGGVPLPE DLEADHGTLV 
LRAYDHLVEP ATTAPTFYTD FPTSVSPLTR EHRADPRLAE RWDLVAFGAE VGTAYSELTD 
PVEQRRRLEA QSLKAASGDV EAMELDEDFL AALEHGMAPT GGLGLGVDRL LMMLTGASIR 
QTVLFPFVRP GPKS