Gene Amir_0719 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAmir_0719 
SymbolligB 
ID8324882 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameActinosynnema mirum DSM 43827 
KingdomBacteria 
Replicon accessionNC_013093 
Strand
Start bp796372 
End bp797985 
Gene Length1614 bp 
Protein Length537 aa 
Translation table11 
GC content78% 
IMG OID644941263 
ProductATP-dependent DNA ligase 
Protein accessionYP_003098528 
Protein GI256374868 
COG category[L] Replication, recombination and repair 
COG ID[COG1793] ATP-dependent DNA ligase 
TIGRFAM ID[TIGR00574] DNA ligase I, ATP-dependent (dnl1) 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGCTGTTCT CACGGGTGGT CGAGGTGTCC GCCGAGGTGG GGTCGACCCG CTCCCGGCTG 
GCGAAGGTGT CGGCGCTGGC CGGGCTGCTG CGCGGTGTCG AGGACACCGG TGCCACCGGG
GACACCGAGG CGGTGGTGTC GTTCCTGGTG GGCGTGCCCC GGCAGGGCCG GATCGGCGCC
GGGTTCCGCA CCGCGCGGCA GCTGGCGGCC CCGCCCGCCG ACGAGGCGTC GCTGCGGGTG
TCCGACGTGG ACGGCGCGCT GGGCGAGTTC GCCGCCGAGT CCGGCAGGGG CAGCGCCGCG
CGGCGGGCCG CGCTGCTGGC GACCCTGTTC GCCGGGGCCA CGGCCGACGA GCAGGACTTC
CTCAAGCGGC TGCTGACCGG CGAGCTGCGG CAGGGCGCGC TGGAGGGCGT GATGCTGGAC
GCCGTGGCGC GGGCGGCCGG GGTGCCGGGC GAGGCGGTGC GGCGGGCGTT CATGCTGTCC
GGCGAGCTGC CCGCGACCGC GGCGGCGGCG CTGCGCGACG GGGTGGACGG GCTGGCCAGG
TTCCGGCTGG AGGTGGGCCG CCCGGTGCGG CCGATGCTGG CCTCCCCCGC CGAGTCGCTG
GAGGACGCGC TGGCCGGGTC GGGCCCGGTC GTGGTGGAGC ACAAGCTGGA CGGGGCGCGC
ATCCAGGTGC ACCGGGACGG CGACGAGGTG CGGGTGTTCA CCCGGACCCT GCGCGAGATC
ACGAGGACCG TGCCGGAGCT GGTGGAGCTG GCGCGCGGCC TGCCGTGCCG GTCGGTGGTG
CTGGACGGGG AGACCCTGGC GCTGCGCGAC GACGGCAAGC CCAGGCCGTT CCAGGAGACG
ATGAGCCGGT TCGGCGCGCA GGACGAGCGG GAGCTGCTGC TCAGCCCGTT CTTCTTCGAC
TGCCTGCACC TGGACGGCGA CGACCTGCTG GACCGGCCGC TGCGCGAGCG GCTCGCGGCG
CTGCGGTCGG CGGCCGGGCG GCACGTGGTG CCGGGGGTCG CCGACGCCTC GGCCGAGGCC
GCCGCCGGGG TGCTGCGGGA CGCGCTGGCG GGCGGGCACG AGGGCGTGGT GGTCAAGGAC
CTCGACGCGC CCTACGCGGC CGGGCGGCGC GGCGGGGCGT GGCGGAAGGT CAAGCCGGTG
CACACGCTCG ACCTGGTGGT GCTCGGGGTC GAGTGGGGCA GCGGGCGGCG CGAGGGGCTG
CTGTCCAACC TGCACCTCGG GGCGCGCGAC CCGGACGGCG GACCGCCGGT GATGGTCGGC
AAGACGTTCA AGGGACTCAC GGACGAGCTG CTGGCGTGGC AGACGCGGGC GCTGCTCGCG
ATCGCCGAGG AGCGCGGCGA GTGGGTGGTG CGGGTGCGGC CGGAGCTGGT GGTGGAGATC
GAGCTGGACG GCGCGCAGGT CAGCCCCCGC TACCCCGGCG GGGTGGCGCT GCGGTTCGCG
CGGGTGGTGC GGTACCGGCC GGACAAGACC GCCGCCGAGG CCGACACCCT CGACGCGGTC
CGGGCGATGC TGCCCGAGCG CGCGGCGCCG GAGGGCGGCG GAGCCCCCCT GGACCCCCGG
GAGCCCGCCA CCGGTGCGCC CCGAGCGCAG GACACCGCCG GTGACCACGG GTAG
 
Protein sequence
MLFSRVVEVS AEVGSTRSRL AKVSALAGLL RGVEDTGATG DTEAVVSFLV GVPRQGRIGA 
GFRTARQLAA PPADEASLRV SDVDGALGEF AAESGRGSAA RRAALLATLF AGATADEQDF
LKRLLTGELR QGALEGVMLD AVARAAGVPG EAVRRAFMLS GELPATAAAA LRDGVDGLAR
FRLEVGRPVR PMLASPAESL EDALAGSGPV VVEHKLDGAR IQVHRDGDEV RVFTRTLREI
TRTVPELVEL ARGLPCRSVV LDGETLALRD DGKPRPFQET MSRFGAQDER ELLLSPFFFD
CLHLDGDDLL DRPLRERLAA LRSAAGRHVV PGVADASAEA AAGVLRDALA GGHEGVVVKD
LDAPYAAGRR GGAWRKVKPV HTLDLVVLGV EWGSGRREGL LSNLHLGARD PDGGPPVMVG
KTFKGLTDEL LAWQTRALLA IAEERGEWVV RVRPELVVEI ELDGAQVSPR YPGGVALRFA
RVVRYRPDKT AAEADTLDAV RAMLPERAAP EGGGAPLDPR EPATGAPRAQ DTAGDHG