Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Amir_0719 |
Symbol | ligB |
ID | 8324882 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Actinosynnema mirum DSM 43827 |
Kingdom | Bacteria |
Replicon accession | NC_013093 |
Strand | - |
Start bp | 796372 |
End bp | 797985 |
Gene Length | 1614 bp |
Protein Length | 537 aa |
Translation table | 11 |
GC content | 78% |
IMG OID | 644941263 |
Product | ATP-dependent DNA ligase |
Protein accession | YP_003098528 |
Protein GI | 256374868 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1793] ATP-dependent DNA ligase |
TIGRFAM ID | [TIGR00574] DNA ligase I, ATP-dependent (dnl1) |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGCTGTTCT CACGGGTGGT CGAGGTGTCC GCCGAGGTGG GGTCGACCCG CTCCCGGCTG GCGAAGGTGT CGGCGCTGGC CGGGCTGCTG CGCGGTGTCG AGGACACCGG TGCCACCGGG GACACCGAGG CGGTGGTGTC GTTCCTGGTG GGCGTGCCCC GGCAGGGCCG GATCGGCGCC GGGTTCCGCA CCGCGCGGCA GCTGGCGGCC CCGCCCGCCG ACGAGGCGTC GCTGCGGGTG TCCGACGTGG ACGGCGCGCT GGGCGAGTTC GCCGCCGAGT CCGGCAGGGG CAGCGCCGCG CGGCGGGCCG CGCTGCTGGC GACCCTGTTC GCCGGGGCCA CGGCCGACGA GCAGGACTTC CTCAAGCGGC TGCTGACCGG CGAGCTGCGG CAGGGCGCGC TGGAGGGCGT GATGCTGGAC GCCGTGGCGC GGGCGGCCGG GGTGCCGGGC GAGGCGGTGC GGCGGGCGTT CATGCTGTCC GGCGAGCTGC CCGCGACCGC GGCGGCGGCG CTGCGCGACG GGGTGGACGG GCTGGCCAGG TTCCGGCTGG AGGTGGGCCG CCCGGTGCGG CCGATGCTGG CCTCCCCCGC CGAGTCGCTG GAGGACGCGC TGGCCGGGTC GGGCCCGGTC GTGGTGGAGC ACAAGCTGGA CGGGGCGCGC ATCCAGGTGC ACCGGGACGG CGACGAGGTG CGGGTGTTCA CCCGGACCCT GCGCGAGATC ACGAGGACCG TGCCGGAGCT GGTGGAGCTG GCGCGCGGCC TGCCGTGCCG GTCGGTGGTG CTGGACGGGG AGACCCTGGC GCTGCGCGAC GACGGCAAGC CCAGGCCGTT CCAGGAGACG ATGAGCCGGT TCGGCGCGCA GGACGAGCGG GAGCTGCTGC TCAGCCCGTT CTTCTTCGAC TGCCTGCACC TGGACGGCGA CGACCTGCTG GACCGGCCGC TGCGCGAGCG GCTCGCGGCG CTGCGGTCGG CGGCCGGGCG GCACGTGGTG CCGGGGGTCG CCGACGCCTC GGCCGAGGCC GCCGCCGGGG TGCTGCGGGA CGCGCTGGCG GGCGGGCACG AGGGCGTGGT GGTCAAGGAC CTCGACGCGC CCTACGCGGC CGGGCGGCGC GGCGGGGCGT GGCGGAAGGT CAAGCCGGTG CACACGCTCG ACCTGGTGGT GCTCGGGGTC GAGTGGGGCA GCGGGCGGCG CGAGGGGCTG CTGTCCAACC TGCACCTCGG GGCGCGCGAC CCGGACGGCG GACCGCCGGT GATGGTCGGC AAGACGTTCA AGGGACTCAC GGACGAGCTG CTGGCGTGGC AGACGCGGGC GCTGCTCGCG ATCGCCGAGG AGCGCGGCGA GTGGGTGGTG CGGGTGCGGC CGGAGCTGGT GGTGGAGATC GAGCTGGACG GCGCGCAGGT CAGCCCCCGC TACCCCGGCG GGGTGGCGCT GCGGTTCGCG CGGGTGGTGC GGTACCGGCC GGACAAGACC GCCGCCGAGG CCGACACCCT CGACGCGGTC CGGGCGATGC TGCCCGAGCG CGCGGCGCCG GAGGGCGGCG GAGCCCCCCT GGACCCCCGG GAGCCCGCCA CCGGTGCGCC CCGAGCGCAG GACACCGCCG GTGACCACGG GTAG
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Protein sequence | MLFSRVVEVS AEVGSTRSRL AKVSALAGLL RGVEDTGATG DTEAVVSFLV GVPRQGRIGA GFRTARQLAA PPADEASLRV SDVDGALGEF AAESGRGSAA RRAALLATLF AGATADEQDF LKRLLTGELR QGALEGVMLD AVARAAGVPG EAVRRAFMLS GELPATAAAA LRDGVDGLAR FRLEVGRPVR PMLASPAESL EDALAGSGPV VVEHKLDGAR IQVHRDGDEV RVFTRTLREI TRTVPELVEL ARGLPCRSVV LDGETLALRD DGKPRPFQET MSRFGAQDER ELLLSPFFFD CLHLDGDDLL DRPLRERLAA LRSAAGRHVV PGVADASAEA AAGVLRDALA GGHEGVVVKD LDAPYAAGRR GGAWRKVKPV HTLDLVVLGV EWGSGRREGL LSNLHLGARD PDGGPPVMVG KTFKGLTDEL LAWQTRALLA IAEERGEWVV RVRPELVVEI ELDGAQVSPR YPGGVALRFA RVVRYRPDKT AAEADTLDAV RAMLPERAAP EGGGAPLDPR EPATGAPRAQ DTAGDHG
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