Gene Amir_0458 details

Gene Information

• Locus tag: Amir_0458
• ID: 8324617
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Actinosynnema mirum DSM 43827
• Kingdom: Bacteria
• Replicon accession: NC_013093
• Strand: +
• Start bp: 496042
• End bp: 499320
• Gene Length: 3279 bp
• Protein Length: 1092 aa
• Translation table: 11
• GC content: 72%
• IMG OID: 644941002
• Product: putative sensor with HAMP domain
• Protein accession: YP_003098271
• Protein GI: 256374611
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG0642] Signal transduction histidine kinase

Plasmid Coverage information

• Num covering plasmid clones: 13
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGGTGACG GACTGGCTGC GCTGCGTGAT GGAACTGTGA CTGAATCAAC GGGAACCGGG 
TTGACGACAG GCGTCAGGCA GGGGGAGGCG CGCACCGCCT CGTGGCGGCT GCAGAACTGG 
CGCCTGCCCA CCAAGCTGGG GGCTGTCCTT CTCATCCCGA CCGTGGCGGC GCTCGCCCTC 
GGCGGTCTGC GCGTGCAGTC CGACCTGGCG AACGCCACGC AGTTCAGTCG ACTGGCCAAC 
CAGGTGCAGT TGGAGACCGC GGTCGCGGAC CTGGTGCACC AGCTCCAGCG CGAGCGCGAC 
CTCAGCACGT GGTATGTGGC GTCGAGCAAG CAGATCGAGA GCGTCGCGCT CGACCGCCAG 
CTCGTGCGGG TGAGCGACGC GGTCGAGACG CTCAAGAGCA AGATCATCGA CCTGAGCGGG 
GACTTGGCCC CGGAGACGGT CGAGCGGTTC CGCGGCACGG CCGAGCAGCT CACCCGGCTG 
AACAGCCTGC GCAGCGCGGT CCGCGAGACG CAGTACCCGT CAGACGCGGT CCTGCGCGTC 
TACTCGGAGT CCGTCGAGAG CCTCCTCGAC CTTGGCGAGC AGGCCATCGG TGGCATCGAC 
GACCCCGAGC TGGCGAGGCT CCACCTGGCC ACGAACGCGA TGGCCCGCAT CAAGGAGCAG 
GAGTCGCAGA AGCGCGGCAT CCTGTTCGAC GTCTTCCAGC GCGGCAGCTT CGCGGCCAAC 
CAGGAGCGCG CCCTCCTGGC CGTCAACGCC GAGCTGGACG CGGCGCGCAA CGACTTCCGC 
AAGTCCGCCA CGCCCGACCA GGCCAAGATC TACGACGACA CCGTCACCGG TCTGATCATC 
GACACGGCGA ACAACATGCA GGAGACGGCG CTCAACCTGG CGGGGACCAC CAGCGGGTTC 
GGCGACATCA GCCCCAAGGG CTGGGACGTG TCCTCCACCC TGACGGTCAA CAAGACCCGC 
CAGGTGGAGG TCATGCTCAT CGAGCAGCTG CAGAGGCTGA GCGACGAGCG CACCGGCGAG 
GCTCGCGCCG CGGCGTTCTA CGACTCCGGC GTCGTGCTCG GCGCGCTGCT CATGGCCCTC 
GTCATGGCGC TGTTCGTCGC CCGCTCGATC CTCAACCCGC TGCGCCTGCT GCGCCGCACG 
GCGCTCGACG TGGCGGACAA GGGCCTGCCG GAGGCGGTCG AGAAGATCCT CGCCGACCCG 
AACCCGCAGG AGGCCGCCAA GACCGCCATC GCGCCGGTGC CCATCACCAC GCGCGAAGAG 
GTCGGCCAGG TGGCGCGGGC GTTCGACGCG GTGCACGGCG AGGCGGTCCG ACTGGCCGCC 
GAGCAGGCGA TGCTCCGCGA CAACGTCAAC GCCATGTTCG TCAACCTGTC CCGCCGGTCG 
CAGGCGCTCG TCGAGCGCCA GCTGAACCTG ATCGACCGGC TGGAGCAGGA CGAGCAGGAC 
CCGGACCAGC TCGCCAGCCT GTTCGAGCTG GACCACCTCG CGACGCGGAT GCGCCGCAAC 
AGCGAGAACC TGCTGATGCT CTCGGGCACC GACCTGTCCC GGCGGCTCAC CCGCCCGGTC 
CCCGTCGCCG AGGTCCTCGG CGCCGCGGTG TCCGAGGTCG AGCAGTACGC CAGGGTCCAG 
GTCGGCCAGA CCCCGGAGCT CACCGTCCAG GGCCGCGCGG TCAACGACCT CGTGCACCTG 
ATCGCGGAGC TGCTCGACAA CGCGACCGCG TTCTCCGACC CGGTGACCAA GGTCACCGTG 
CGCACGGCCC GCACCCGCAA GGGCGAGCTG GCGATCGAGA TCCAGGACCG CGGCGTCGGC 
ATGAGCGACC AGGACCTGCG CGACGCCAAC GAGCGGCTGG CCAACCCGCC GGACGTCGAC 
GTCGCCGTCT CCCGCCGCAT GGGCCTGTAC GTGGTCGCGC GGCTGGCCAA GCGGCACGAC 
GTCAAGGTCA GGCTCCGGGG CAACGAGGAC ATCGAGGGCG GCACCACCGC GCTCGTCACC 
GTCCCCGAGG CGCTGGTCAC CTCGGCCGGT CAGACCGCCC ACCCGATGGG CGCGGACCTG 
ATCGGCTCGC CCAGCGCGCC TGCCCCGAGC GCCTTCCCGA GCCCGAACAC CGCCCAGCGC 
GCCAGCGGCA TCGCGGGCGC CTTCGGCGGC GGCAACGGCA CGGCGGGCGT CACCAGCAGG 
CACGACGAGG AGTCCAGCTA CCCGGCGGTC AGCTTCATGT CGACCGACGT GGACGCCGAC 
GCGACCCGCG CGCCCTACCG GGCCGAGGTG CCGCAGGAGA CCTCCGCGGA GATCTCCCAG 
GCGTCCTGGC TTCCCATGGT CGAGGAGCAG CCCCCCGCGG TGGCGCGGGA CGCGCAGAAC 
GAGCCCACGG GCACGTTCGG CTCGCCCACC CTCTTCACCG CCTACGAGGA CCGCGACGCT 
CCCCAGGCGG ACCACGAGCA CGGCTACCAG ACCACCCAGT TCCCGGCCGT GGACGACTCG 
GCGAACGCGT TCGCGCCGTT CGCCGCGCCG CTGCCGGAAC CGGAGCCGGA GCCGGAGCCC 
GAGCCCGAGC CGGAACCGGT CGTCTTCCAG CGCAGCAGCG CACCCAGGGC GTCCGCGCCC 
GCGCGGCCCG TGGTCGACGA CACCCCGACG GAACGCCTCC CGATCTACGA GGCCGTCCTG 
TCGCAGTGGT TCCAGTCCGT GGGAAGCGAG ACGTCCGCGG CGACCACCCA GGCCGTTCCG 
CCCGCCCCGG CCGCACCCGC TCCGCGCCCC GCGCGGCAGG ATGTGCAGCC GGAACCCCAG 
CGGGAGGAGG CTCCTCTGCC CACGCGCAAG CCACGTCCGG TGTCGGAGCA GGCCCAGGAA 
GCCGCCGCCC CGAGCAGCGC CATCGAGAAC GGTCTGCCCA AGCGGCAGCC CGGTTCGCAG 
AGCAACATGT CCAAGCGCAC ACTGGAGACG AGCAGGGTGA GCGAGCCGGA GGCCGTCCAG 
GCCGAACCGG CGGCAAAGGC GAGCCCCGCG TCCGTCTGGC AGTCGCCCGC GGACGAGGGC 
TGGCAGGCCG CGCAGTCCCT GCTCAGCAGC ACCCCCGACG CCACGACGCA GGCAGGGCTC 
CCCAAGCGGA AGCCCAAGGC TCAGCTTGTG CCGGGCAGCG CCGCGCCCCT CGCGGGCGCG 
ACGCAGCAAC CGCAGCAGCC CCCGCTGCCA CCACGATCGG CAGATGTCAT TCGTGGACGC 
ATGTCGAGTC TTCAGCAGGG CGTCCGTCGG GGGCGGCACG CGCTGATCGA CGCTTACGCT 
GGTGACATGT CGAGCCGGCA AGACGAGGAG CAGGAGTGA 

 

Protein sequence

MGDGLAALRD GTVTESTGTG LTTGVRQGEA RTASWRLQNW RLPTKLGAVL LIPTVAALAL 
GGLRVQSDLA NATQFSRLAN QVQLETAVAD LVHQLQRERD LSTWYVASSK QIESVALDRQ 
LVRVSDAVET LKSKIIDLSG DLAPETVERF RGTAEQLTRL NSLRSAVRET QYPSDAVLRV 
YSESVESLLD LGEQAIGGID DPELARLHLA TNAMARIKEQ ESQKRGILFD VFQRGSFAAN 
QERALLAVNA ELDAARNDFR KSATPDQAKI YDDTVTGLII DTANNMQETA LNLAGTTSGF 
GDISPKGWDV SSTLTVNKTR QVEVMLIEQL QRLSDERTGE ARAAAFYDSG VVLGALLMAL 
VMALFVARSI LNPLRLLRRT ALDVADKGLP EAVEKILADP NPQEAAKTAI APVPITTREE 
VGQVARAFDA VHGEAVRLAA EQAMLRDNVN AMFVNLSRRS QALVERQLNL IDRLEQDEQD 
PDQLASLFEL DHLATRMRRN SENLLMLSGT DLSRRLTRPV PVAEVLGAAV SEVEQYARVQ 
VGQTPELTVQ GRAVNDLVHL IAELLDNATA FSDPVTKVTV RTARTRKGEL AIEIQDRGVG 
MSDQDLRDAN ERLANPPDVD VAVSRRMGLY VVARLAKRHD VKVRLRGNED IEGGTTALVT 
VPEALVTSAG QTAHPMGADL IGSPSAPAPS AFPSPNTAQR ASGIAGAFGG GNGTAGVTSR 
HDEESSYPAV SFMSTDVDAD ATRAPYRAEV PQETSAEISQ ASWLPMVEEQ PPAVARDAQN 
EPTGTFGSPT LFTAYEDRDA PQADHEHGYQ TTQFPAVDDS ANAFAPFAAP LPEPEPEPEP 
EPEPEPVVFQ RSSAPRASAP ARPVVDDTPT ERLPIYEAVL SQWFQSVGSE TSAATTQAVP 
PAPAAPAPRP ARQDVQPEPQ REEAPLPTRK PRPVSEQAQE AAAPSSAIEN GLPKRQPGSQ 
SNMSKRTLET SRVSEPEAVQ AEPAAKASPA SVWQSPADEG WQAAQSLLSS TPDATTQAGL 
PKRKPKAQLV PGSAAPLAGA TQQPQQPPLP PRSADVIRGR MSSLQQGVRR GRHALIDAYA 
GDMSSRQDEE QE