| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_4192 |
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| Symbol | |
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| ID | 4670346 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidovorax sp. JS42 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008765 |
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| Strand | - |
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| Start bp | 25708 |
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| End bp | 28593 |
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| Gene Length | 2886 bp |
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| Protein Length | 961 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 639826866 |
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| Product | TrwC protein |
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| Protein accession | YP_974028 |
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| Protein GI | 121582496 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member |
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| TIGRFAM ID | [TIGR02686] conjugative relaxase domain, TrwC/TraI family |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.000135476 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGATTAGCA TGAACAACGT GGGCAGCGCC GGGCAGGCAC TGCACTACTT TTCCGCTGAC
AACTACTACA CCCAGGACGA GGGCTTGGAG CATTCCGAGT GGTTCGGCAA GGGGGCCGAG
CACCTTGGGC TTTCCGGCAA GATTGATCGT CAAGCCTTCT TCGAGGTGTT GAACGGAAAG
GTGGATGGCC AAGAGCTGGG CAAGTGGGTC AAGAACGAGG AAACCGGCGA GAAGGAACGC
GAGCACCGGC CGGGCACCGA CATGACGTTT TCCGCGCCCA AGAGTGTTTC TCTCATGGCC
GAGGTGTACG GCAAGCGGGA CGTGCGGGAG GCTCATGAGG CGGCCGTCAA GAAGGCACTC
AGCCACATCG AAACCGAGCT GGCCAGGACG CGGCAAACCG TGGACGGGAA GACCGAAGCG
GTGCAGACCG GCAACGTGAC TGTGGCCATG TTCCGGCATA ACACAAGCCG CGACCTCGAC
CCGCAGACGC ATACGCACGC AGTAATCATG AACGCCACCA AACGGGAGGA TGGGCAGTGG
CGCTCCCTGA CCAATGAAGA AATCTACAAC GCGCAGCGCG TTATCGGGGC CATCTACACG
TCCGAGCTGG CCGACCGGCT CCAGGCGCTG GGCTACGACA TTCGCCGCAC CGACGAGAAG
GGCAACTTCG AGATTGCCGG TATCACCCGC GAGCAGATCG AGCACTTCAG CCAGCGCCGG
GCAGAAATAG AGGCGGCGCT GAAAGCCAAG GGCGTGGACA TCGACGATGC CAGCGCGCAG
CAGAAGGAAG ACGCCACGCT GAAGACCAGA GCGCGCAAGG TGGACGTGGA TCATGAAGCC
TTGATCGGGA GCTGGAAGGA ACGAGCCAAA GACATCGGGA TCGACTTCGA CGCCATCCAG
GCCAAGGCCG ACGCGCAACG GGCGCAAGGC GGTGTGGTGC GCGCTGACAA GCTCACCGGG
CGCGAGGCGA TGTCCTTTGC GGCCGCACAC CTGATCGAGC GCGAGGCCGT GGTATCCAAG
AACGACCTCA TGGCGGCGGC CATCGAGCAC GGGGCAGGGC GCGTATCGGC ATCGGAGGTG
AAACGGGCCT TCGACAAGCT GGAGAAGGAT GGTGATCTGG TGGCCTTGCC TGACGGCAAC
TACACGACCA AGAAGATGCT GGGCAGCGAA ATGTGGGCAC TCGACCAAGT GCGCGCACAG
AAGGGCCAGA CGCCGAAGAT GATGGAGCCG GAAGCGGTGG CAGCGCGGAT CGCGCAGGCC
GAGGGCCGGC AGGGCTTCAA ATACAGCGAA GGCCAGAAGG AGGCCATCAG CAAGGTACTG
ACCACTGAAG ATCGTTACGT GGCGGTGCAG GGCCTTGCCG GGACGGGTAA GACCACTATG
CTCAAAGGCG TGCGCGAAAT GGCGCAGGAG CAGGGCTACA CGGTGCGCGG CATGGCTCCG
ACCGGGGCGG CCAGCAAGGT GCTGGCCAGG GAGACAGGTA TTGCTACTGA TACCGTCTCG
ATGTTCCAGA TCAAGGAGCG GCAGCTACAG AAGGACATCG AGTTTGCCAA GCAGTACGCA
CCCGACTTCC AGCGCAAGGC GGAAGTCTGG ATCGTGGATG AATCGTCCTT CCTGTCGCAG
CGCCAGAAGG CCCAGCTCGA CCACATGGCC GAAAAGGCCG GGGCCAAGGT GGTGTACCTG
GGCGACACGC TCCAGTTGCA GGGTGTGGAG GCCGGCAAGC CCTTCGAGCT GGCCCAGCGG
GACGGCATGG AAACCGCGTA CATGACCGAA ATCAACCGCC AGAAGACCGC CGACCTGAAG
CAAGCCGTGG ACATCATCAC TGGCCGCGAC AACCTGGGGG ACGGCCAGCG GCTCACCCAA
GTGGAGCTGG CCAACAACGC GCGGGCCTTC GAGTACATGG ACAAGGCTGG AATGATCCGG
GAAATTCCCG AGAAGTCCGA GGACGACAAG GGCCGCCTGG TGGCGGCCGT AGTGCAGGAC
ATCTTGAAGC TCGACAAGGC CGAGCGTGAG CGAACCATCG TCATTACCGC CTATAACGAA
GACAGGCGGG CCATCAATGC CGGCGTGCGC GAGGGACTGA AGGAACAGGG CGAACTGTCG
CGCTCCGAGG ACACGCGCGA AATCTACACC TCGAAGGGGT GGACGCGGGC CATGCAGAAG
GAGGCGCAAT ACTACAAGGC CGGCGACGTG GTGCGCTTCG GGCGGGACTA CCAGCAGATC
GACGCCAAGA AGGGCGAATA CATGCGCGTG TCGGCCGTGG ATGCCCCCAA TGGCACTGTG
GTGCTCCAGA AGGAAGACGG CTCTGTGATC GCATGGCAGC CGAAGAAGCA CAACAAAATC
GAGGTGTACG ACCGCGACAC CCGCGAGCTG GCCAAGGGCG ACCTGATCCG TATCACCCGA
AACGAAGGCG AGTTCAAAAA CGGCGAGGTG GCGCGCGTCA CGGCTGTGGC CGGGGACAAG
GTGACGCTGG AGCTGAAGCA AGGCAAGGAC GTGTCATTGC ACCAAGTGGA TCTCTCTCGA
AACAAGCATT GGGATCATGC CTACGCGCAG ACGGTTCACG CCTCCCAGGG TGCGACTCAG
CACCGGGCCA TCTTCCACAT CCGAGCGCCT CAGACCGAGA GCGAGAAGAA GCAGGAGCGG
GCGCTGGAGA ATATGGCCAA GGTCTTCGGG GATCGGAGCT TCTATGTCGG GGCCACGCGC
GCCTCGCATG AGCTGCGCAT CTACACCAAC GACAAGGCGG TGGCGGCCAA GGCGGTGGCG
GCGAAGCAAG ACAAGACCAG TGCCGTGGAA ACGCTCCGGC AACACGAACG GGCCACGGCA
ATCACGGCCG ACAAGGCGGG ACAACGCCCG GTGTCGCCGC AGCGAAACGG TGACGTTCAA
CGGTAA
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| Protein sequence | MISMNNVGSA GQALHYFSAD NYYTQDEGLE HSEWFGKGAE HLGLSGKIDR QAFFEVLNGK
VDGQELGKWV KNEETGEKER EHRPGTDMTF SAPKSVSLMA EVYGKRDVRE AHEAAVKKAL
SHIETELART RQTVDGKTEA VQTGNVTVAM FRHNTSRDLD PQTHTHAVIM NATKREDGQW
RSLTNEEIYN AQRVIGAIYT SELADRLQAL GYDIRRTDEK GNFEIAGITR EQIEHFSQRR
AEIEAALKAK GVDIDDASAQ QKEDATLKTR ARKVDVDHEA LIGSWKERAK DIGIDFDAIQ
AKADAQRAQG GVVRADKLTG REAMSFAAAH LIEREAVVSK NDLMAAAIEH GAGRVSASEV
KRAFDKLEKD GDLVALPDGN YTTKKMLGSE MWALDQVRAQ KGQTPKMMEP EAVAARIAQA
EGRQGFKYSE GQKEAISKVL TTEDRYVAVQ GLAGTGKTTM LKGVREMAQE QGYTVRGMAP
TGAASKVLAR ETGIATDTVS MFQIKERQLQ KDIEFAKQYA PDFQRKAEVW IVDESSFLSQ
RQKAQLDHMA EKAGAKVVYL GDTLQLQGVE AGKPFELAQR DGMETAYMTE INRQKTADLK
QAVDIITGRD NLGDGQRLTQ VELANNARAF EYMDKAGMIR EIPEKSEDDK GRLVAAVVQD
ILKLDKAERE RTIVITAYNE DRRAINAGVR EGLKEQGELS RSEDTREIYT SKGWTRAMQK
EAQYYKAGDV VRFGRDYQQI DAKKGEYMRV SAVDAPNGTV VLQKEDGSVI AWQPKKHNKI
EVYDRDTREL AKGDLIRITR NEGEFKNGEV ARVTAVAGDK VTLELKQGKD VSLHQVDLSR
NKHWDHAYAQ TVHASQGATQ HRAIFHIRAP QTESEKKQER ALENMAKVFG DRSFYVGATR
ASHELRIYTN DKAVAAKAVA AKQDKTSAVE TLRQHERATA ITADKAGQRP VSPQRNGDVQ
R
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