Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ajs_4140 |
Symbol | |
ID | 4672207 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidovorax sp. JS42 |
Kingdom | Bacteria |
Replicon accession | NC_008782 |
Strand | - |
Start bp | 4426146 |
End bp | 4427858 |
Gene Length | 1713 bp |
Protein Length | 570 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 639841178 |
Product | protein translocase subunit yidC |
Protein accession | YP_988317 |
Protein GI | 121596421 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0706] Preprotein translocase subunit YidC |
TIGRFAM ID | [TIGR03592] membrane protein insertase, YidC/Oxa1 family, C-terminal domain [TIGR03593] membrane protein insertase, YidC/Oxa1 family, N-terminal domain |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 0.555817 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAACGACA TCCGCCGCAC CATCCTGTGG GTGATCTTTG GCTTTTCCAT GGTTCTGCTG TGGGACAAGT GGCAGATCCA CAACGGCAAC AAGGCCACCT TCTTCCCCAC GCCGCCGGCG CAGACGGCCA GCACGCCCGC GGTAGCGGCC TCCGGCGCTG GCGCTGCCGA CGTGCCGGTG GCCGCCGCCA GCGCCACGCC GGGCGCGGCG GCGCAGCCGC CCGCAGGCGC CAGCGTGCCG CCTGCCGCCG CCATCCCGCG CAAGCGTGTG ACGGTGAGCA CCGACGTGCT GCGCCTGAGC TTTGACTCCG AAGGCGGTTC GCTGGTCCAC GGAGAGCTGC TGCAATATCC CGAGATGGAG GACAAGACCA AGCCCTTCCT GCTGCTGGAC GAGAGCGCTT CGCGTGTCTA TGTCGCGCAG ACGGGCCTCA TCGGCAACGG TGCCGGCGGC GCCTTCCCCA CGCACAAGAC CCCCATGGCG GTCGTGCCCG GTCCGCGCGA ACTGCAGGAC GGCCAGAACG AGCTGACCGT GCGTTTCGAG TCGGCCGACA TGGGCGGTGT GAAGCTGGTC AAGACCTGGA CGCTCAAGCG CGGCGCCTAC GACGTGGCCG TGAAGCACGA GGTGGTCAAC ACGGGCACGG CCCCGGTATC GCCCCAGCTG TACCTGCAGT TGGCGCGCGA TGGCAACAAG CCGGCGGGCG AGTCGTCGTT CTACTCCACG TTCACCGGTC CGGCCGTGTA CACCGAGGCG AAGAAGTACC ACAAGGTGGA ATTCAAGGAC ATCGAGAACG GCAAGGCCGA GATCGACAAG TCTTCCAGCG ACGGCTACGT GGCCATGGTG CAGCACTACT TCGCCACCGC GTGGCTGCTG GGCGACGGCG TGCAGCGCGA CAATTTCGTG CGCAAGGTGG ACACCAACCT GTACTCGGTG GGCATGATCA CGCCGCTGGG CGAGATCGCC CCCGGCCAGT CGAAGGCCGT GGACGCGCGC CTGTTCGCCG GCCCGCAGAT CGAGACGCTG CTGGAAAAGC TGGCCCCGGG CCTGGAGCTG GTCAAGGACT ATGGCTGGCT CACCATCCTG GCCAAGCCGC TGTACTGGCT GCTGGACCAG TTGCACAAGG TGATCGCCAA CTGGGGCTGG TCCATCGTGG CGCTGGTGTT CCTGTTGAAG ATCGCGTTCT ACTGGCTCAA CGCCAAGGCC TACGCCAGCA TGGCCAAGAT GAAGGCCATC AACCCGCGCA TCATGGAAAT GCGCGAGCGC CTGAAGGACA AACCCCAGCA GATGCAGCAG GAGATGATGC GCATCTACCG CGAGGAGAAG GTCAATCCCA TGGGCGGCTG CCTGCCCATC ATGATCCAGA TCCCGGTGTT CATTGCGCTG TACTGGGTGC TGCTGTCCAG CGTGGAGATG CGCAATGCGC CGTGGATCGG CTGGATCAAG GACCTGTCCT CGCCCGACCC ATTCTTCATC CTGCCGCTCC TGATGACGCT CTCGTCGCTG CTGCAGACGG CGCTGAACCC CGCGCCGCCG GACCCGATGC AGGCCAAGAT GATGTGGCTG ATGCCGCTGA TGTTCAGCGT GATGTTCTTC TTCTTCCCGG CCGGCCTGGT GCTGTACTGG CTGACGAACA ACATCCTGTC GATCGCGCAG CAGTGGATCA TCAACACCCG CATGGGCGTG CCGCCGCAGT TCAACCTGCC CAAGTTCCGC TGA
|
Protein sequence | MNDIRRTILW VIFGFSMVLL WDKWQIHNGN KATFFPTPPA QTASTPAVAA SGAGAADVPV AAASATPGAA AQPPAGASVP PAAAIPRKRV TVSTDVLRLS FDSEGGSLVH GELLQYPEME DKTKPFLLLD ESASRVYVAQ TGLIGNGAGG AFPTHKTPMA VVPGPRELQD GQNELTVRFE SADMGGVKLV KTWTLKRGAY DVAVKHEVVN TGTAPVSPQL YLQLARDGNK PAGESSFYST FTGPAVYTEA KKYHKVEFKD IENGKAEIDK SSSDGYVAMV QHYFATAWLL GDGVQRDNFV RKVDTNLYSV GMITPLGEIA PGQSKAVDAR LFAGPQIETL LEKLAPGLEL VKDYGWLTIL AKPLYWLLDQ LHKVIANWGW SIVALVFLLK IAFYWLNAKA YASMAKMKAI NPRIMEMRER LKDKPQQMQQ EMMRIYREEK VNPMGGCLPI MIQIPVFIAL YWVLLSSVEM RNAPWIGWIK DLSSPDPFFI LPLLMTLSSL LQTALNPAPP DPMQAKMMWL MPLMFSVMFF FFPAGLVLYW LTNNILSIAQ QWIINTRMGV PPQFNLPKFR
|
| |