Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ajs_3959 |
Symbol | |
ID | 4671881 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidovorax sp. JS42 |
Kingdom | Bacteria |
Replicon accession | NC_008782 |
Strand | + |
Start bp | 4215595 |
End bp | 4217631 |
Gene Length | 2037 bp |
Protein Length | 678 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 639841001 |
Product | transketolase |
Protein accession | YP_988141 |
Protein GI | 121596245 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0021] Transketolase |
TIGRFAM ID | [TIGR00232] transketolase, bacterial and yeast |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCAACT CTCAACAAAT GGCGAATGCG ATCCGCGCAC TCGCAATGGA TGCCGTTCAA CAAGCCAACT CCGGCCACCC CGGCGCCCCC ATGGGCATGG CCGACATGGC CGTGGCGTTG TGGGGCCGGC ACCTGAAGCA CAACCCCACC AACCCCCAGT GGATGGACCG CGACCGTTTC GTGCTGTCCA ACGGCCACGC GTCGATGCTG CTGTACTCGC TGCTGCACCT CACGGGCTAC GACCTGCCCC TGCAGGAGCT GAAGAACTTC CGCCAGCTGC ACAGCAAGAC CCCCGGCCAC CCCGAGCACG GCATCACCCC CGGCGTGGAG ACCACCACCG GCCCGCTGGG CCAGGGCGTG ACCAACGCCG TGGGCTTTGC GCTGGCCGAG AAGCTGCTGG CCGCCGAGTT CAACCGCGAA GGCCACGCCG TGGTGGACCA CCACACCTAC GTGTTCCTGG GCGACGGCTG CCTGATGGAA GGCATCAGCC ATGAGGCCGT GGCTCTCGCC GGCGCGTGGA AGCTCAACAA GCTCATCGCG CTGTACGACG ACAACGGCAT CAGCATCGAC GGCCAGGTGG CGCCCTGGTT CATCGACAAC ACCCCGCAGC GCTTCATGGC CTGCGGCTGG AACGTGATCG ACGCCGTGGA CGGGCATGAC GTGGAAGCTG TGGCCGCCGC CATCGGCCAA GCCAAGGCCA GCGCCGACAA GCCCACGCTG ATCGTCTGCA AGACCGTCAT CGGCAAGGGC AGCCCCAACC GCGCCAACAC GGCCAAGGCC CATGGCGAGC CCCTGGGCGC CGAGGAAATC AACCTCACGC GCGCTGCCCT GGGCTGGACG CACGAGCCCT TCGCGATCCC CGAGTCGGTG TACGCCGACT GGGATGCCAA GGCGGCCGGC CAGGCCGCCG AAGCCGAGTG GACGCTGCGC TTTGCCGCCT ACGAGGCCGC CTACCCCGAG CTGGCATTCG AGCTGTCCCG CCGCATGGCT GGCGACCTGC CCAAGCACTT CGCCCAGGTG GCGGTGGACA CCGTGGTGGC CGCGCACACC AAGGCCGAGA CCGTGGCCAG CCGCAAGGCC AGCCAGATCG CGCTGGAAGC CTTCACCGCC GCACTGCCCG AACTGCTGGG CGGCAGCGCC GACCTGACCG GCTCCAACCT CACCAACACC AAGAGCACGC CCGCGCTGCG CATCGAGCCC AACGGCGCCG TGGCCAAGAC CGAGGCCGGC CAGGTGGGCC GCCACATCAA CTACGGCGTG CGCGAGTTCG GCATGGCGGC CATCATGAAC GGCCTGGCGC TGCACGGCGG TTTCATCCCC TACGGCGGCA CCTTCCTCAC ATTCAGCGAC TACAGCCGCA ACGCCATCCG CATGGCCGCG CTGATGAAGC AGCGCGTGAT CCACGTGTTC ACGCACGACT CCATCGGCCT GGGCGAGGAC GGCCCCACGC ACCAGTCGAT CGAGCACGCC GCCAGCCTGC GCCTGATCCC CGGCCTGGAC GTGTGGCGCC CCGCCGACAC GGCCGAGACC GCCGTGGCCT GGAGCGTGGC CCTGTCCAAC CGCGACAAGC CCACCGCGCT GCTGCTGTCC CGCCAGAACC TGCCCTACGC GCCCAAGAGC GACCTGGGCG ACATCTCGCG CGGCGCCTAC ATCCTCTCCG AGCCCGCCGC CGTGGGTCTG AAGAAGAAGG CCCAGGCCGT GATCATCGCC ACCGGCTCCG AGGTGCAGCT GGCCCTGGCC GCGCAGCAAC TGCTGGCCGC CAAGAAGATC GCCGTGCGCG TGGTCTCCAT GCCCAGTACC ACCACCTTCG ACCGCGAGGA CACCAAGTAC AAGCAACTGG TGCTGCCCGC CGGCACGCCG CGCATCGCCG TCGAGATGGG CGTGTCCGAC TTCTGGTGGA AGTACGGCTG CGCCGCGGTG GTCGGCATCG ACACCTATGG CGAGTCGGCC CCGGCCGGCG TGCTGTTCAA GCACTTCGGC TTCACGGCCG AGAACGTCGC TGACACGGTG CTGGCCGCGC TGCAGCGCGC GCGCTGA
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Protein sequence | MANSQQMANA IRALAMDAVQ QANSGHPGAP MGMADMAVAL WGRHLKHNPT NPQWMDRDRF VLSNGHASML LYSLLHLTGY DLPLQELKNF RQLHSKTPGH PEHGITPGVE TTTGPLGQGV TNAVGFALAE KLLAAEFNRE GHAVVDHHTY VFLGDGCLME GISHEAVALA GAWKLNKLIA LYDDNGISID GQVAPWFIDN TPQRFMACGW NVIDAVDGHD VEAVAAAIGQ AKASADKPTL IVCKTVIGKG SPNRANTAKA HGEPLGAEEI NLTRAALGWT HEPFAIPESV YADWDAKAAG QAAEAEWTLR FAAYEAAYPE LAFELSRRMA GDLPKHFAQV AVDTVVAAHT KAETVASRKA SQIALEAFTA ALPELLGGSA DLTGSNLTNT KSTPALRIEP NGAVAKTEAG QVGRHINYGV REFGMAAIMN GLALHGGFIP YGGTFLTFSD YSRNAIRMAA LMKQRVIHVF THDSIGLGED GPTHQSIEHA ASLRLIPGLD VWRPADTAET AVAWSVALSN RDKPTALLLS RQNLPYAPKS DLGDISRGAY ILSEPAAVGL KKKAQAVIIA TGSEVQLALA AQQLLAAKKI AVRVVSMPST TTFDREDTKY KQLVLPAGTP RIAVEMGVSD FWWKYGCAAV VGIDTYGESA PAGVLFKHFG FTAENVADTV LAALQRAR
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