| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_3908 |
|---|
| Symbol | |
|---|
| ID | 4672118 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax sp. JS42 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008782 |
|---|
| Strand | - |
|---|
| Start bp | 4160198 |
|---|
| End bp | 4161406 |
|---|
| Gene Length | 1209 bp |
|---|
| Protein Length | 402 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 639840950 |
|---|
| Product | benzoate transporter |
|---|
| Protein accession | YP_988090 |
|---|
| Protein GI | 121596194 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG3135] Uncharacterized protein involved in benzoate metabolism |
|---|
| TIGRFAM ID | [TIGR00843] benzoate transporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.00157906 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.79315 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCACAAT CCGCCGCCAT GCAGTTTTTC AAAGACCTGA GCCTGTCCGC ATTCACCGCC
GGTTTCGTGG CTGTGCTGGT AGGGTTCACC AGTTCGGTCG CCATCGTGTT CCAGGCGGCG
CAGGCGTTCG GGGCGACGCC CGAGCAGATC ACCTCCTGGA TGTGGGCGCT GGGCCTGGGC
ATGGGACTGT GCTCGCTGAT TCCCTCGCTC ATCCTGCGCC AGCCGGTCAT GGTGGCCTGG
TCCACGCCCG GTGCAGCGGT GCTCGCCACC GCCGGCCTGG CCGGCTTCAG CATGGGCGAG
GCGGTCGGCG CCTTCATGGT GTGTGCCTTG CTCATCACCC TGGCCGGAGT GACGGGTTGG
TTCGAGCGCG TGATGAACCG TATTCCCATG GAACTGGCGT CGGCGCTGCT GGCCGGCGTG
CTGGCGCGCT ATGGCATGCA GGCCTTCGCA GCCGTGCAGA CCGCGCTGCC GCTGGTGCTG
GTCATGCTGG CGTCCTACTT GTTTGCACGG CGGCTGCTGC CCCGCTATGC GGTTGTGCTC
ACGCTGGTGG CAGGCGTTGC CTGGGCCGCA GGCAATGGCC AGATGCGCTG GTCCGCGGTG
CACTGGGCGC TGGCCACACC GGTCTTCACC ACGCCGCAGT TCAGCCTACA GGCGCTCATG
AGCCTGGCGC TGCCGCTGTT CATCGTGACC ATGGCGTCGC AGAACCTTCC GGGTGTGGCC
GTCATGCGGG CCACCGGATA CCAACTGCCG GTGTCGCGGC TGATCACCCT GACGGGCCTG
GCCACCCTGG TGCTGGCACC GTTCGGCGCC TTTGCCCTCA ACTTCAGCGC CATCACCGCA
GCGATCTGCA TGGGGCCCGA GGCGCACCCC GACCGCGCGC GGCGGTACAC CGCCGCCGCA
TCGTGCGGGC TGCTGTACAT CGCAGTGGGC ATCTTTGGTG CGGTGGTCAC GGGGCTGCTG
ACGGCGTTTC CACAGGAGCT GGTGGTGGCC ATCGCTGGGC TGGCGCTGTT GGGCGCCATC
GGAGGAGGGC TAGCGTCTGC GCTGCAGGCC GAAGCGCATC GGGAGGCGGC GTTGATCACT
TTTCTGGTGA CGTTGAGCGG TGTCACCATA GTCGGGATCG GATCGGCGTT TTGGGGGGTG
GTCGCCGGCA GCATCGCGCT ATTTGTGCAA CAGTATGGAC GCCCGCGCGC GCCCCAGGCG
CCGCGCTAG
|
|---|
| Protein sequence | MPQSAAMQFF KDLSLSAFTA GFVAVLVGFT SSVAIVFQAA QAFGATPEQI TSWMWALGLG
MGLCSLIPSL ILRQPVMVAW STPGAAVLAT AGLAGFSMGE AVGAFMVCAL LITLAGVTGW
FERVMNRIPM ELASALLAGV LARYGMQAFA AVQTALPLVL VMLASYLFAR RLLPRYAVVL
TLVAGVAWAA GNGQMRWSAV HWALATPVFT TPQFSLQALM SLALPLFIVT MASQNLPGVA
VMRATGYQLP VSRLITLTGL ATLVLAPFGA FALNFSAITA AICMGPEAHP DRARRYTAAA
SCGLLYIAVG IFGAVVTGLL TAFPQELVVA IAGLALLGAI GGGLASALQA EAHREAALIT
FLVTLSGVTI VGIGSAFWGV VAGSIALFVQ QYGRPRAPQA PR
|
|---|
| |