| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_3820 |
|---|
| Symbol | |
|---|
| ID | 4670835 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax sp. JS42 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008782 |
|---|
| Strand | + |
|---|
| Start bp | 4053928 |
|---|
| End bp | 4056012 |
|---|
| Gene Length | 2085 bp |
|---|
| Protein Length | 694 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 639840853 |
|---|
| Product | flagellar biosynthesis protein FlhA |
|---|
| Protein accession | YP_988003 |
|---|
| Protein GI | 121596107 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1298] Flagellar biosynthesis pathway, component FlhA |
|---|
| TIGRFAM ID | [TIGR01398] flagellar biosynthesis protein FlhA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.136206 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGTCCC CCTCGATCCA TTCCGTCCGG CAATGGGCCG GCAACCACGG CCCGGCACTG
CAGGGGCTGT CGGCCCCGCT GCTGGTAGTG GCCATCCTGG CGCTGATGGT GCTGCCCGTG
CCGCCCTGGA TGCTGGACAC CTTCTTCACC CTCAACATCG CCGTGGCGCT GATGGTGATG
ATGGTGGCCG CGTACATGAT CAAGCCGCTG GACTTCGCGG CCTTCCCGTC GGTGCTGCTG
CTCACCACGC TGATGCGCCT GTCGCTGAAC GTGGCGTCCA CCCGCGTGGT GCTGCTGGAA
GGCCACACCG GCCCGGGCGC GGCCGGCGCG GTGATCGAGG CCTTCGGCCA CTTCTTGATC
GGCGGCAACT TCGCCGTGGG CCTGATCGTG TTCGCGATCC TGGTGGTGAT CAACTTCGTG
GTGGTGACCA AGGGCGCGGA GCGCATCGCC GAGGTGTCGG CCCGCTTCAC GCTGGACGCC
ATGCCCGGCA AGCAGATGGC CGTGGACGCC GACCTGAACG CCGGCCTGAT CGACGAGAAG
GAAGCCAAGC GCCGCCGCGC CGAGGTGCAG GAAGAGGCCA ACTTCTTCGG CTCCATGGAC
GGCGCGAGCA AGTTCGTGCG CGGCGATGCC GTCGCCGGCA TCCTGATCCT GATCATCAAC
ATCGTGGGCG GCTTCGCCAT CGGCATGCTG CAGCATGGCC TGTCGGCCAA CGACGCCGCC
AACAGCTACA TCCTGCTGGC CGTGGGCGAT GCGCTGGTGG CCCAGATCCC CGGCCTGCTG
ATTTCCGTCG CGGCCGCGAT GGTGATCTCG CGCGTGGGCA AGGACTCCGA CATGGGCCAG
CAGATCGTGC AGCAGTTGCT CATGTCGCCG CGCGTGCTGG GCGTGACCGC GGGCGTGCTG
ATCCTGCTGG GCCTCATCCC CGGCATGCCG CACACCGTGT TCCTGGTCAT GGGCAGCCTC
CTCGGCTACG GCGCCTGGAT GCTGCTGCAG CGCCAGCGCC GCCCCGCCCC GGTGGAAGAA
GCCCCCGCGC CCGTGAGCGA CGGCGAGGCC AGCTGGGACG ACCTGCAGCC CGTGGACCTG
CTGGGCCTGG AGCTGGGCTA CCGCCTGATC GCCTTGGTGG ACAAGAGCCG CCAGGGCGAC
CTGCTCACGC GCATCAAGGG CGTGCGCCGC AAGTTTGCGC AGGAGGTGGG CTTCCTGCCG
CCGGCCGTGC ATGTGCGCGA CAACCTGGAG CTCAAGCCCA GCGCCTACCG CATCACGCTG
CGCGGTGTGG TGGTGGGCGA AGGCGAGGCA TTCCCCGGCA TGTACCTGGC CATCAACCCC
GGCGGCATCT CCACGCCGCT GATCGGCACC CCCACCACCG ACCCCGCCTT CGGCCTGCCC
GCGCACTGGA TCGACGCCAC GCAGAAGGAA GCGGCACAAA TGGCGGGCTT TACCGTGGTT
GATTCGGAAA CCGTGATGGC GACCCATTTG TCACACTTGA TGCAAGTGCA CGCCGCCAAG
CTCCTGAGCC GCACCGAGAC GCAGCAGCTC GTGGAGCATG TGACCCGGCT GGCACCCAAA
CTCATCGAAG AAGTCGTGCC CAAGATGGTG TCCATCACAA CATTCCAGAA AGTGCTGCAG
CTGTTGCTGG AGGAGTCCGT GCACATCCGC GACATCCGCA CCATCATCGA GACGCTGGCG
GAACACGCCG GCAGCACGCA AGACCCGGTG GAACTGGCGC GCCGCGTGCG CATCGCCCTG
TCCCCCGCCA TCGTGCAGCA GATCTACGGC CCCACGCGCG AGCTCAGCGT CATCGCCATC
GAGCCCGGGC TGGAGCGCCT GCTGATGCAG GCCCTGGGCA ACGCCAGCGG CCCGGCGCTG
GACCCCGGCG TGGCCGACCT GCTCACCCAC AAGGCCGCCG AAGTCGCCCT GCAGCAGGAA
GAGCTGGGCA TGCCCGCCTG CCTGCTGGTG CCCGACCAGA TCCGCAACGC CATCGCCCGC
CTGGTGCGGC GCGTGGCTCC CCGCTTGCAG GTGCTCGCCC ACAGCGAGAT TCCTGAGACC
CACACCATCC GCATCGGCCC GATCCTCAAA GGTGCATCCG CATGA
|
|---|
| Protein sequence | MTSPSIHSVR QWAGNHGPAL QGLSAPLLVV AILALMVLPV PPWMLDTFFT LNIAVALMVM
MVAAYMIKPL DFAAFPSVLL LTTLMRLSLN VASTRVVLLE GHTGPGAAGA VIEAFGHFLI
GGNFAVGLIV FAILVVINFV VVTKGAERIA EVSARFTLDA MPGKQMAVDA DLNAGLIDEK
EAKRRRAEVQ EEANFFGSMD GASKFVRGDA VAGILILIIN IVGGFAIGML QHGLSANDAA
NSYILLAVGD ALVAQIPGLL ISVAAAMVIS RVGKDSDMGQ QIVQQLLMSP RVLGVTAGVL
ILLGLIPGMP HTVFLVMGSL LGYGAWMLLQ RQRRPAPVEE APAPVSDGEA SWDDLQPVDL
LGLELGYRLI ALVDKSRQGD LLTRIKGVRR KFAQEVGFLP PAVHVRDNLE LKPSAYRITL
RGVVVGEGEA FPGMYLAINP GGISTPLIGT PTTDPAFGLP AHWIDATQKE AAQMAGFTVV
DSETVMATHL SHLMQVHAAK LLSRTETQQL VEHVTRLAPK LIEEVVPKMV SITTFQKVLQ
LLLEESVHIR DIRTIIETLA EHAGSTQDPV ELARRVRIAL SPAIVQQIYG PTRELSVIAI
EPGLERLLMQ ALGNASGPAL DPGVADLLTH KAAEVALQQE ELGMPACLLV PDQIRNAIAR
LVRRVAPRLQ VLAHSEIPET HTIRIGPILK GASA
|
|---|
| |