| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_3586 |
|---|
| Symbol | |
|---|
| ID | 4672942 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax sp. JS42 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008782 |
|---|
| Strand | - |
|---|
| Start bp | 3783259 |
|---|
| End bp | 3784320 |
|---|
| Gene Length | 1062 bp |
|---|
| Protein Length | 353 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 639840618 |
|---|
| Product | nifR3 family TIM-barrel protein |
|---|
| Protein accession | YP_987774 |
|---|
| Protein GI | 121595878 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0042] tRNA-dihydrouridine synthase |
|---|
| TIGRFAM ID | [TIGR00737] putative TIM-barrel protein, nifR3 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.459705 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGATCG GCCCCATTCC CTTGGCCAAC CGCCTGTTCG TCGCCCCCAT GGCGGGCGTG
ACGGACCGGC CGTTCCGCCA GCTGTGCAAG CGGCTGGGCG CCGGCTATGC GGTGAGCGAG
ATGGTGACCT CGCGCAAGGA CCTGTGGAAC AGCCTCAAGA CCAGCCGCCG CGCCAACCAC
GAGGGCGAGC CCGGCCCGAT CGCGGTGCAG ATCGCCGGCA CCGACGCGGC CATGATGGCC
GTGGCCGCGC TCTACAACAT CGACCGCGGC GCACAGATCA TTGACATCAA CATGGGCTGC
CCCGCCAAGA AGGTCTGCAA CAAGTGGGCG GGCTCCGCCC TGATGCAGAA CGAAGCCCTG
GCCGTGGAGA TCGCCGAGGC CGTGGTGGCC GCCTGCGCAC CGCGCGGCGT GCCCGTCACA
CTGAAGATGC GCACCGGCTG GTGCCAGCAG CACAAGAACG CCGTGGTGCT GGCGCGCCGC
TTCGAAGACG TGGGCATCCA GATGCTCACG GTGCACGGCC GCACGCGCGA GCAGGGTTAC
AAGGGCCAGG CCGAGTACGA CACCATCGCT GCCGTGAAGG CCGCCGTGCG CGTGCCCGTG
GTGGCCAATG GCGACATCAC GTCGCCCGAG AAAGCCCGGG CGGTGCTGGC CGCCACAGGC
GCCGACGCGG TCATGATCGG GCGCGCGGCC CAGGGCCGGC CGTGGATCTT CCGCGAGATC
GGCCACTACC TCGCCACTGG CGAGCACCTC GCGCCGCCGC TGGTGGCCGA GGTGCGCCGC
CTGCTGCTGG AGCACCTGCA GGACCACTAC GGCCTGTACG GCGAGGCCAG CGGCGTGCGC
AGCGCGCGCA AGCACATCGC CTGGTATGTG CGCGCGCTGC CGGGCGGCGA GGCACTGCGA
CAACACATCA ACACCATCGA GGACTGCGCG GCGCAGTGGC AGGCGGTGGC CGATTTCTTC
AGCGCGCTGG GCGCGCAGAT GGACCGGCTG CCGTCCGCAC ACGACGGCGC CGACGCGGTC
CCGCCCGTGA GGGAAACAGA GCATGAGCCG GAACAACATT GA
|
|---|
| Protein sequence | MQIGPIPLAN RLFVAPMAGV TDRPFRQLCK RLGAGYAVSE MVTSRKDLWN SLKTSRRANH
EGEPGPIAVQ IAGTDAAMMA VAALYNIDRG AQIIDINMGC PAKKVCNKWA GSALMQNEAL
AVEIAEAVVA ACAPRGVPVT LKMRTGWCQQ HKNAVVLARR FEDVGIQMLT VHGRTREQGY
KGQAEYDTIA AVKAAVRVPV VANGDITSPE KARAVLAATG ADAVMIGRAA QGRPWIFREI
GHYLATGEHL APPLVAEVRR LLLEHLQDHY GLYGEASGVR SARKHIAWYV RALPGGEALR
QHINTIEDCA AQWQAVADFF SALGAQMDRL PSAHDGADAV PPVRETEHEP EQH
|
|---|
| |