| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_3308 |
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| Symbol | |
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| ID | 4672196 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidovorax sp. JS42 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008782 |
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| Strand | - |
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| Start bp | 3494055 |
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| End bp | 3496151 |
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| Gene Length | 2097 bp |
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| Protein Length | 698 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 639840347 |
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| Product | choline/carnitine/betaine transporter |
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| Protein accession | YP_987506 |
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| Protein GI | 121595610 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1292] Choline-glycine betaine transporter |
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| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 0.634741 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGAATG AACGCTCCCT CTCTGGCGGT CACGGCTCTG GGCCGCAGGG GCAGCCGCCT
GCGGCTGGCT CCGAGGCAGG CCCACGGTTT ACGTTTTCGG CTCCGGTGGT GGTTCCGTCA
TTGCTGGTGC TGGGCTTGCT GCTGGTGCTG TGCGGCATGT TCCCGCAGCA GGCTGTCCGC
TTTTTCACCG GTGTGCAGGT CTGGGTGGTG GGCCACTTTG ACTGGTTTTA CAGCGCAGCG
GTGACGCTGT TCCTGGTCTT TCTGGCGCTG GTGGCGGCCA GCAGTTTTGG CGACATCCGC
CTGGGCCCCG ATGATGCGAA GCCCGATTTC AGCTTTCTGT CGTGGACCGC GATGCTGTTT
GCCGCAGGCA TGGGCATCGG GCTCATGTAC TTTGGCGTGG GCGAGCCGCT GCAGCACTAC
ATCAAACCGC CCATGGCGCC GGCAGGCACG GCCAACGCGG CGCGCGAGGC CCTGCAGTCC
ACGTTTTTTC ACTGGGGGTT TCATGCCTGG GCGGTGTACG GCACCATGGG ACTGGTGCTG
GCGTATTTCG GCTTTCGCTA CAACCTGCCG CTGACCATGC GGTCGGGCCT GTACCCGCTG
CTGCAGCAGC GCATCAACGG GCCCATCGGA CATACGGTGG ATGCTTTCGC GCTCGTGGGT
ACCATCGCGG GCATTGCCAC CACGCTGGGT TATGGCGCGC TGCAGCTGGC TGCAGGCATT
GGACTGTTGA CCGGCTGGGA CACCAACACC GCGCTGTTTC GCGTGGCCGT GGTCGCCGTG
GTGGCGATCC TGGCCGGGCT GTCAGCCGTC ACGGGTTTGG ACAAAGGGGT GCGCGTTCTG
TCCGAGTTCA ACCTGGCGCT GTCCTTCGTG CTACTGGCTT TCGTCATCGC TTTCGGGCCC
ACCGTCCATC TGTTCCAGGC GCTGAGCGAG AACGTCGGCA ACTATTTCTC CGGCCTGGTG
CAGATGTCGC TGCGCACCTT TGCCTACGAG GCACCGCAGC AGCCCGGCTG GTACGGCGAC
TGGACGGTGC TGTACTGGGC ATGGTGGATC TCCTGGTCGC CCTTCGTGGG CATGTTCATT
GCGCGCATCT CACGCGGGCG TACTGTGCGC GAATTCATCG TCGGCGTGCT GCTCGTGCCC
ACCGCATTCA ACCTGCTGTG GATGACGGCG TTTGGCAACA GTGCCATCTG GATTGACACC
CATGTTGCGC AGGGCGCGCT GGCCCAGACG GCTGGTAACG TGGATGCGCT GTTGTTTCGC
TTCTTCGAGT ACCTGCCGTT CGTGAAAATC GTTTCGTGGC TGGCCATCGT GCTGATCTCG
GTGTTCTTCA TCACATCTGC CGACTCGGGC GCGTACGTGC TGGACGCGAT CGCAACGCGA
GGCAACCCGC GCTCGCCGGT GTGGCAGCGG CTGTTCTGGG CCGCCGTGCT GGGCGTGACG
GCGGCGGTGC TGCTGGTGGC GGGCGGCCTC AAGGCGCTGC AGGCCTTGAC GCTGGCGGCT
GCCCTGCCCG TGGCGGCCAT CATGGTGGCG CTGTGCTGGG GTCTGTGGCG CGCCATGCAG
GCCGACCGCG CCCATGCCTC GCAAGATCTG GCCATGGCCA CCAACTTCTG GAGCGGGCAG
CACTGGCGCA AGCGGCTGGA GCAGATCGTG CACCAGCCCA CGCGCGCTGA CGTGCTGCGC
TTCATGCAGG CCACGGTGCT GCCCGCCATG CGCGATGTGG TGGCAGAGTT GGGCCGCCGC
GGCGTGCAGG CGCATGTGCA GGACGACACC GCCGTTGCCG ACCCCGATGC CGCCCAGATC
CGCCTGACCA TCCCCATGCC CGAGCTGCGC GATTTTGTCT ATGGCGTGCG CCCCGTGCGG
CGCAAGCTGC CGGGCTTCAT GCTGGCCGAG GTGGCGCCGC AGGACAAGGA GCGGCTCTAC
GTGGTGGAGC CCATCACCTT TTTTGCCGAC GGGCGATCGG GCTACGACAT CCAGTACCTG
CGTGGCGAAG AGGTCATTGC GGACATCCTT CGGCATTACG AGCGCTATCT GTCGGCCAGT
GCCAGTCAAA GCACGCAGCT GCTCAACCGC GCCCCAGGCC ACGACGGGCC CGTGTGA
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| Protein sequence | MSNERSLSGG HGSGPQGQPP AAGSEAGPRF TFSAPVVVPS LLVLGLLLVL CGMFPQQAVR
FFTGVQVWVV GHFDWFYSAA VTLFLVFLAL VAASSFGDIR LGPDDAKPDF SFLSWTAMLF
AAGMGIGLMY FGVGEPLQHY IKPPMAPAGT ANAAREALQS TFFHWGFHAW AVYGTMGLVL
AYFGFRYNLP LTMRSGLYPL LQQRINGPIG HTVDAFALVG TIAGIATTLG YGALQLAAGI
GLLTGWDTNT ALFRVAVVAV VAILAGLSAV TGLDKGVRVL SEFNLALSFV LLAFVIAFGP
TVHLFQALSE NVGNYFSGLV QMSLRTFAYE APQQPGWYGD WTVLYWAWWI SWSPFVGMFI
ARISRGRTVR EFIVGVLLVP TAFNLLWMTA FGNSAIWIDT HVAQGALAQT AGNVDALLFR
FFEYLPFVKI VSWLAIVLIS VFFITSADSG AYVLDAIATR GNPRSPVWQR LFWAAVLGVT
AAVLLVAGGL KALQALTLAA ALPVAAIMVA LCWGLWRAMQ ADRAHASQDL AMATNFWSGQ
HWRKRLEQIV HQPTRADVLR FMQATVLPAM RDVVAELGRR GVQAHVQDDT AVADPDAAQI
RLTIPMPELR DFVYGVRPVR RKLPGFMLAE VAPQDKERLY VVEPITFFAD GRSGYDIQYL
RGEEVIADIL RHYERYLSAS ASQSTQLLNR APGHDGPV
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