| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_3250 |
|---|
| Symbol | lysS |
|---|
| ID | 4672449 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax sp. JS42 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008782 |
|---|
| Strand | + |
|---|
| Start bp | 3434285 |
|---|
| End bp | 3435832 |
|---|
| Gene Length | 1548 bp |
|---|
| Protein Length | 515 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 639840290 |
|---|
| Product | lysyl-tRNA synthetase |
|---|
| Protein accession | YP_987449 |
|---|
| Protein GI | 121595553 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1190] Lysyl-tRNA synthetase (class II) |
|---|
| TIGRFAM ID | [TIGR00499] lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.273416 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCACTG AAGCCACTCC TGCACCAGCC CCCCAGGACG AAAACCAACT CATCGCCGAA
CGCCGTGAAA AGCTCAAGGC TCTGCGCGAG AACCAGGCCC AGGGCCAAGG CGTGGCATTT
CCCAATGACT ACAAGCCCCA GCACCATGCC GCAGTGCTGC AGCAGCAGTA CGGCACATTG
GATGGAGAAG CGCTCGAAGC CCAGGCGATC ACGGTGAGCG TGGCCGGCCG CATGATGCTC
AAGCGCGTCA TGGGCAAGGC CAGCTTCGCG ACCCTGCAGG ATGGATCGCT GGGTGACACC
GGCGGGCGCA TCCAGCTCTA CGTGACACGC GACGCCATTG GCGAGGAAGC CTATTCCGAC
TTCAAGCGCT GGGACCTCGG TGACATCCTG GGTGCCGAAG GCACGCTGAT GAAGACCAAG
ACCGGCGAGC TATCGGTCAA GGTGTCGCGC CTGCGCCTGC TCACCAAGAG CCTGCGCCCC
ATGCCCGACA AATTCCACGG TGTGGCCGAC CAGGAGGTCA AGTACCGCCA GCGCTACGTG
GACCTGATGA CCGACGAGGC CGCGCGCCGC CGCTTCGTCG CGCGCAGCAA GGCTGTGGGC
AGCATCCGCT CTTTCATGAT GGAGCACGGC TTCCTGGAGG TGGAAACGCC CATGCTGCAC
CCCATTCCCG GCGGCGCCAA CGCCAAGCCC TTCGTCACCC ACCACAATGC GTTGGAGCAG
GAGATGTTCC TGCGCATCGC GCCCGAGCTG TACCTCAAGC GCCTGATCGT CGGCGGCTTC
GAGCGCGTGT TCGAGATCAA CCGCAACTTC CGCAACGAAG GCATCTCGGT GCGCCACAAC
CCCGAGTTCA CGATGATGGA GTTTTATGCG GCCTACTGGA ACTACCGCGA TCTGATGGAT
TTCACCGAGG CGCTGGTGCG CGATGCCGCA CTCAAGGCCA CGGGCACGCT GCAGCTCACC
TACGGTGGCC GCGCGGTGGA TCTGGCCCAG CCCTTCCAGC GCCTCACGAT CCGCGAGGCC
ATCTACCAGC ACACCGAGGC CGGCGCACAT GTGGACGATG CCGCCTGGCT CATCAGCGCG
CTCAAGAAAC TGGGCATGAC CGAGGAGAAG GACCGCCTGT CCACCCGGAC CCTCGCCAGC
CTGCAGGTGC TCTACTTCGA GGAAGAGGTG GAGGACAAGC TCTGGCAGCC GACCTTCATC
ATGGAGCACC CGACCGAGAT CAGCCCTCTG GCGCGCGCCA ACGACCTGCG CCCCGAGGTG
ACGGAGCGCT TCGAGCTCTA CATCACCGGC CGCGAGTTCG GCAATGGCTT CTCGGAGCTG
AACGATGCCG AAGACCAGGC CGCCCGCTTT CATGCGCAGG TGGCTGCCAA GGACGCGGGC
GATGACGAGG CCATGTTCTT CGACCACGAC TTCGTACGTG CGCTGGAATA CGGCATGCCG
CCCACAGGTG GTTGCGGCAT CGGCATCGAC CGGCTGATGA TGCTGCTCAC CGACAGCCCG
AGCATCCGTG ACGTGATCCT GTTCCCGGCC CTGCGGCGCG AGCACTGA
|
|---|
| Protein sequence | MSTEATPAPA PQDENQLIAE RREKLKALRE NQAQGQGVAF PNDYKPQHHA AVLQQQYGTL
DGEALEAQAI TVSVAGRMML KRVMGKASFA TLQDGSLGDT GGRIQLYVTR DAIGEEAYSD
FKRWDLGDIL GAEGTLMKTK TGELSVKVSR LRLLTKSLRP MPDKFHGVAD QEVKYRQRYV
DLMTDEAARR RFVARSKAVG SIRSFMMEHG FLEVETPMLH PIPGGANAKP FVTHHNALEQ
EMFLRIAPEL YLKRLIVGGF ERVFEINRNF RNEGISVRHN PEFTMMEFYA AYWNYRDLMD
FTEALVRDAA LKATGTLQLT YGGRAVDLAQ PFQRLTIREA IYQHTEAGAH VDDAAWLISA
LKKLGMTEEK DRLSTRTLAS LQVLYFEEEV EDKLWQPTFI MEHPTEISPL ARANDLRPEV
TERFELYITG REFGNGFSEL NDAEDQAARF HAQVAAKDAG DDEAMFFDHD FVRALEYGMP
PTGGCGIGID RLMMLLTDSP SIRDVILFPA LRREH
|
|---|
| |