| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_2904 |
|---|
| Symbol | |
|---|
| ID | 4671901 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax sp. JS42 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008782 |
|---|
| Strand | - |
|---|
| Start bp | 3078831 |
|---|
| End bp | 3079535 |
|---|
| Gene Length | 705 bp |
|---|
| Protein Length | 234 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 639839961 |
|---|
| Product | conjugal transfer protein TrbF |
|---|
| Protein accession | YP_987121 |
|---|
| Protein GI | 121595225 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3701] Type IV secretory pathway, TrbF components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.071912 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGATTCA AACGACCGCA GGTGCGCTAC GCCGACACGC CGCAGCCTGC CACTCCGTAC
CAATCCGCAG CTCAGGTCTG GGACGAGCGC ATCGGCTCGG CCCGCGTGCA GGCCAGGAAT
TGGCGCTTCA TGGCCTTTGG CTGCCTCACC TTGGCCGTGC TGATGGCCGG CGGCCTGGTC
TGGCGCTCGG CGCAGTCCAT CGTGACGCCC TACGTGATCG AGGTGGACAA CGCGGGCCAG
GTGCGCGCCG TCGGCGAGGC CGCCACGCCG TACCGGCCTA GCGATGCGCA GATTGCCTAC
CACCTCGGCC GCTTCATCGG CCTGGTGCGC TCGCTGTCCA TCGATCCCAT CGTGGTACGG
CAGAACTGGC TGGATGCCTA CGACTACACG ACCGACAAGG GGGCGGTCGT GCTCAACGAG
TACGCGCGGG TGGCCGATCC GTTCACGCGC ATCGGCAAGG AGTCGGTGAC GGTGCAGATC
ACCAGCGTGA CCCGCGCCAG CGACACGTCT TTCAACGTGC GCTGGACGGA GACGCGCTTT
GTCAACGGCG CGCTGGATCG CACCGAACGC TGGAACGCCG TGGTGTCCAT CGTGCAGCAG
ACGCCGCGCA CCGAGCAGCG CGTGCGCAAG AACCCCCTGG GCATCTACGT CAACGGCCTG
TCGTGGAGCC GCGAACTGGA AGGAAACGAA GGAGCAAAGC CATGA
|
|---|
| Protein sequence | MRFKRPQVRY ADTPQPATPY QSAAQVWDER IGSARVQARN WRFMAFGCLT LAVLMAGGLV
WRSAQSIVTP YVIEVDNAGQ VRAVGEAATP YRPSDAQIAY HLGRFIGLVR SLSIDPIVVR
QNWLDAYDYT TDKGAVVLNE YARVADPFTR IGKESVTVQI TSVTRASDTS FNVRWTETRF
VNGALDRTER WNAVVSIVQQ TPRTEQRVRK NPLGIYVNGL SWSRELEGNE GAKP
|
|---|
| |