| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_2217 |
|---|
| Symbol | |
|---|
| ID | 4673826 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax sp. JS42 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008782 |
|---|
| Strand | + |
|---|
| Start bp | 2349504 |
|---|
| End bp | 2351267 |
|---|
| Gene Length | 1764 bp |
|---|
| Protein Length | 587 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 639839286 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_986458 |
|---|
| Protein GI | 121594562 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG5293] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.00749141 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.254652 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCCGAC GCTTTGGAAG CGATCTCGCT TCCTTCAAGG CGCTGAACTT AAAGCCCGGC
TTGAACGTCC TGCTCGCCGA CAAGAGCGAA GGTGCGAACG ACCGACAGTC GAGAAACGGT
GCAGGTAAGA CCAGCTTTAT CGAACTGGTG CATTTCCTGT TCGGAGCCGA TGTGCGCAAG
GAGAACATTT TCCGCTCGGA GGCGCTGGCA CCTTGGACCT TCGACGTCAC CGTCGACATC
GCCGGCGAGA CCGTATCGGC CGCCCGCAGT GGCACCAAGC CTAGCCGCAT CCTCGTCAAC
GGGGCTGTGG AATCGTGGCC GATCGCGCCG CAATTTGATC AGCGCGCCGG ATTGTTCGAG
CTATCCAACG AAAATTGGAA GGCCAATCTC GGGCATCTCT GGTTTGGCTT GCCCATCTCG
GCCGGCGATG AGGTCGAGCG CTTCCAGCCG TCGTTCCGTT CGCTCTTCTC CTACTTTGTC
AGGCGGCAAA ATGGCGGCGG TTTCCAGCAG CCGATGCAGC ATTCGACGAT GCAGCAAAGC
TGGGACCAGC AGGTCTCGAT CTGCTATTTG CTCGGTCTCG ATTGGAGCAT TCCTGGCCGG
TTCCAGGAAC TGAGGGCGCA GGAAAAGGTC GCGCAGGAAT TACGGAAGGC TGCCCGCAGC
GGCGACCTCG GCCGCTTCTT CGGTAAGGCC GCCGATCTTC GGACACGGCT AACTATCGCC
GAGGCCCACG CCAAACGACT CCGCAGCCAG CTCGAAACGT TTGAGGTTGT GCCTGAATAC
AAGGCACTTG AGCAGGAAGC CAATGAGATC ACGCGCGAGA TCGACAGCCT GAACGTAGAG
AACGTGATCG ATGGCAATCT CCTGCAACAG CTTCGAGCAT CGTTGGCCGA CGAAGACGCG
CCGGATCTGG GTGATGTAAC GAAGCTCTAT GCCGAAGCCG GTGTCGTCCT GCCCGATATG
GTACGGCGGC GTTTTGATGA GGTCGAACTC TTCCATCGGG CCATCATCGA AAACCGGCGC
GCGCATTTGA ATGCCGAGAT CGCCTCGGCA GAGGCACGGG TTGTCGAGCG GGATCAGAGG
ATCTCCGAGC GCGACCGTCG GCGCCGGCAG ATCATGGGAG TCCTGCGCTC CGGCGGGGCA
CTTGAGCATT ATGTGTCCTT GCGTGAGGAA GCCGGAAGGG CCGAGGCCGA GGTCGAAGGA
TTGCGCCAAC GGCTTGAAAC CGCCGAGCGG ATAGAAAGCA CAAAGGCCGA ACTCGATATC
AAGCGAGCCA ATCTGACCAA GGCGCTCCGC GACGACATCC ATGAACGTAG CGACATCACC
CGCGAAGCGA TCCTTGCGTT TGAGTCGCTA TCGGAATCCC TGTACGAAAA GGCCGGTAGC
CTGACGATTT CCGAAACTGG AGGTGGTCCG CAATTCGAGG TCCATATCGA TGGACAGCGA
AGCAAGGGCA TCACCAACAT GCAGATTTTC TGCTTCGATC TCATGTTGAC TGAGATCAGT
TTGAAGAATG GGCGCGGCCC CGGCTTCCTG ATTCACGACA GTCATCTGTT CGACGGCGTC
GATGAGCGTC AGATCGCAAA GGCATTGCAA CTTGGTGCTG AACGGGCGGA GGCGGCTGGT
TTTCAATACA TCGTCACGAT GAACTCGGAC GTGCTGCCAC GTGAGGGGTT CAAGCCGGGC
TTCGATATTC GCGCTCATGT CATGGACACG AAGCTGACTG ATGCGACCGA TACTGGAGGG
TTGTTTGGTT TGCGCTTCGA ATAG
|
|---|
| Protein sequence | MIRRFGSDLA SFKALNLKPG LNVLLADKSE GANDRQSRNG AGKTSFIELV HFLFGADVRK
ENIFRSEALA PWTFDVTVDI AGETVSAARS GTKPSRILVN GAVESWPIAP QFDQRAGLFE
LSNENWKANL GHLWFGLPIS AGDEVERFQP SFRSLFSYFV RRQNGGGFQQ PMQHSTMQQS
WDQQVSICYL LGLDWSIPGR FQELRAQEKV AQELRKAARS GDLGRFFGKA ADLRTRLTIA
EAHAKRLRSQ LETFEVVPEY KALEQEANEI TREIDSLNVE NVIDGNLLQQ LRASLADEDA
PDLGDVTKLY AEAGVVLPDM VRRRFDEVEL FHRAIIENRR AHLNAEIASA EARVVERDQR
ISERDRRRRQ IMGVLRSGGA LEHYVSLREE AGRAEAEVEG LRQRLETAER IESTKAELDI
KRANLTKALR DDIHERSDIT REAILAFESL SESLYEKAGS LTISETGGGP QFEVHIDGQR
SKGITNMQIF CFDLMLTEIS LKNGRGPGFL IHDSHLFDGV DERQIAKALQ LGAERAEAAG
FQYIVTMNSD VLPREGFKPG FDIRAHVMDT KLTDATDTGG LFGLRFE
|
|---|
| |