Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ajs_2082 |
Symbol | |
ID | 4671100 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidovorax sp. JS42 |
Kingdom | Bacteria |
Replicon accession | NC_008782 |
Strand | - |
Start bp | 2197365 |
End bp | 2198315 |
Gene Length | 951 bp |
Protein Length | 316 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 639839160 |
Product | patatin |
Protein accession | YP_986334 |
Protein GI | 121594438 |
COG category | [R] General function prediction only |
COG ID | [COG1752] Predicted esterase of the alpha-beta hydrolase superfamily |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.00726346 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 0.98017 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGCACTGA CCCGCCGCGC CCCACGGCTG GGCCTTGCGC TGGGCAGCGG CTCGGCGCGC GGCTGGGCGC ACATCGGCGT GCTGCAGGCG CTGCGGGAGG AGGGCGTGCG CCTGGACGTG ATCTGCGGCT CCTCCATCGG TGCGCTGGTG GGCGCGGCCT ACGCGGGGGG CGAACTGGAG CGCTTTGCCG ACTGGGTGCA GGGCCTGGGC CTGCGCGATG TGTTCGGCTT CATGGATTTC AATCTGTCGG GCGGCATGCT CAAGGGCGAA AAGCTCATCG CCTTCTGGCG CCGCAACTTC GCCGATTTCG ACATCGACGC GTCGCCGCTG CCCTTCGGCG CGGTGGCGAC CGACCTGCAC TCGGGTGCCG AAGTCTGGCT GCGCCACGGC TCCATCGCCG ACGCGGTGCG CGCTTCCATC GCGCTGCCGG GCCTGTTCAC CCCCGTGAAC CACACCGACG GGCGGCTGCT GGTGGATGGC GGACTCGTCA ACCCCGTGCC CGCATCGCTG GCCCGTGCCA TGGGTGCGGA CATCGTCATC GCCGTGGACC TGAATTCCGA CATCCTGCAC CGCCACATGC ATCCGCTGGC GGTGGTGCGC GAGCCGGATG CCTCCGTGCC CACGGATGCG GCGCCGGTCC CCGGGCCGGA GCCGGTACCC GAACCGCTGG TCAGCGCCGA CTGGATGCGC CGCCTGAAGT TCTGGGCGCC CGCCAGCGGC GAGGCGCCTC CCCCCAAGCC ATCGGCGCTG GACGTGATCA TGACCAGCGT GAACATCATG CAGATGCGCA TCACCCGCAG CCGCATGGCG GGTGACCCGC CCGAGGTGGT GATCGCCCCG CGCCTGGCGC ATTTGGGCCT GCTGGACTTT CACCGTGCCA GCGACGCCAT TGCCGAGGGC CGGCGCGCCG CCCATGCCAG CCTGCCGCAG TTGCGCCAGT TCATGGGCTG A
|
Protein sequence | MALTRRAPRL GLALGSGSAR GWAHIGVLQA LREEGVRLDV ICGSSIGALV GAAYAGGELE RFADWVQGLG LRDVFGFMDF NLSGGMLKGE KLIAFWRRNF ADFDIDASPL PFGAVATDLH SGAEVWLRHG SIADAVRASI ALPGLFTPVN HTDGRLLVDG GLVNPVPASL ARAMGADIVI AVDLNSDILH RHMHPLAVVR EPDASVPTDA APVPGPEPVP EPLVSADWMR RLKFWAPASG EAPPPKPSAL DVIMTSVNIM QMRITRSRMA GDPPEVVIAP RLAHLGLLDF HRASDAIAEG RRAAHASLPQ LRQFMG
|
| |