| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_2063 |
|---|
| Symbol | |
|---|
| ID | 4671274 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax sp. JS42 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008782 |
|---|
| Strand | + |
|---|
| Start bp | 2174424 |
|---|
| End bp | 2175731 |
|---|
| Gene Length | 1308 bp |
|---|
| Protein Length | 435 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 639839141 |
|---|
| Product | polyhydroxyalkanoate depolymerase, intracellular |
|---|
| Protein accession | YP_986315 |
|---|
| Protein GI | 121594419 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG4553] Poly-beta-hydroxyalkanoate depolymerase |
|---|
| TIGRFAM ID | [TIGR01849] polyhydroxyalkanoate depolymerase, intracellular |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.247321 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGTACA CCCTCTACGA GACCCAGCGC TCCCTCATGG AGCCCTTCGC CGACCTGGCG
CAGGCCGCCG CCAAGTTCTA CAGCAACCCG CTGTCGCCGT TCAGCGAGAC GCAACTGGCC
CATCGCATTT CGGCGGGCTA TGAACTGCTG TACCGCCTGG GCAAGGACTA CGAGAAACCC
GAGTTCGGCA TCAGCACCGT GGACGTGGAT GGCGTGAGCG TGGCCATCCA TGAGCGCGTG
GACGTCGACA AGCCGTTCTG CGAACTGCGC CGCTTCAAGC GGTTTTCGGA CGACCCGGCC
ACCTTGCTCA AGCTCAAGGG CCAGCCCGTG GTGCTGATCG TGGCGCCGTT GTCGGGCCAC
TACGCCACGC TGCTGCGCGA CACCGTGCGC TCCATGCTGG AGAGCCACAA GGTCTACATC
ACCGACTGGA AGAACGCGCG CATGGTGCCG CTGCAGGAGG GCGAGTTCCA CCTGGACGAC
TATGTGAACT ACGTGCAGGA GTTCATCCGC TACCTGCAGG GCCAATACGG TAACTGCCAT
GTGATGAGCG TCTGCCAGCC CACCGTGCCG GTACTGGCCG CCGTCTCGCT GATGGCCAGC
CGCGGTGAGA CCACGCCACT GTCCATGACC ATGATGGGCG GCCCCATCGA TGCGCGCCGC
TCACCCACGG CGGTGAACAA CCTGGCCACC CAACACAGCT TGGAGTGGTT CGAGAACAAC
GTCATCTACC GCGTACCCAG CAAATTCCCC GGCGCCGGCC GCCGCGTGTA CCCGGGCTTT
CTGCAGCACA TGGGCTTCGT GGCCATGAAC CCGGACCGGC ACGCCAGCAG CCACTACGAT
TACTTCAAGA ACCTCATCAA GGGCGATGAC GCCAGCGCCG AGGCCCACCG CAAGTTCTAC
GACGAATACA ACGCCGTGCT CGACATGGAT GCCGACTATT ACCTGGAGAC CATCAAGACC
GTCTTCCAGG ACTACAGCCT GGTCAACGGC ACCTGGGACG TGCGCTCGCC GGACGGCGCG
GTGGAGCGCG TGCGCCCCCA GGACATCACC CAGACCGCGC TGCTGACCAT CGAAGGCGAG
CTCGACGACA TCTCCGGCTC CGGCCAGACC GAGGCGGCGC AGGATCTGTG CACCGGCATC
GCCGCGGACC GGCGCAACCA CCTCGAGGTG AAGGGCGCGG GCCACTACGG CATTTTCAGC
GGCCGCCGCT GGCGCGAGCT GGTCTACCCG CAGGTGCGCG ACTTCATCCG TGCCAACCAG
TCCGCCCAGC CCACGTCACG CCCCCGCCGC GCACGCAGCG CCGCCTGA
|
|---|
| Protein sequence | MLYTLYETQR SLMEPFADLA QAAAKFYSNP LSPFSETQLA HRISAGYELL YRLGKDYEKP
EFGISTVDVD GVSVAIHERV DVDKPFCELR RFKRFSDDPA TLLKLKGQPV VLIVAPLSGH
YATLLRDTVR SMLESHKVYI TDWKNARMVP LQEGEFHLDD YVNYVQEFIR YLQGQYGNCH
VMSVCQPTVP VLAAVSLMAS RGETTPLSMT MMGGPIDARR SPTAVNNLAT QHSLEWFENN
VIYRVPSKFP GAGRRVYPGF LQHMGFVAMN PDRHASSHYD YFKNLIKGDD ASAEAHRKFY
DEYNAVLDMD ADYYLETIKT VFQDYSLVNG TWDVRSPDGA VERVRPQDIT QTALLTIEGE
LDDISGSGQT EAAQDLCTGI AADRRNHLEV KGAGHYGIFS GRRWRELVYP QVRDFIRANQ
SAQPTSRPRR ARSAA
|
|---|
| |