| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_1617 |
|---|
| Symbol | |
|---|
| ID | 4674463 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax sp. JS42 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008782 |
|---|
| Strand | + |
|---|
| Start bp | 1670420 |
|---|
| End bp | 1673137 |
|---|
| Gene Length | 2718 bp |
|---|
| Protein Length | 905 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 639838707 |
|---|
| Product | 2-oxoacid dehydrogenase subunit E1 |
|---|
| Protein accession | YP_985886 |
|---|
| Protein GI | 121593990 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG2609] Pyruvate dehydrogenase complex, dehydrogenase (E1) component |
|---|
| TIGRFAM ID | [TIGR00759] pyruvate dehydrogenase E1 component, homodimeric type
[TIGR03186] alpha-ketoglutarate dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.743799 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAATCGGC ATCCTATTTC GGTATGCGGG GCCTACAGTG GCGCGATGAA CGCCCCCACA
CCCCTCGCAA CACTGGCTAC CCTCGCTGCC GCGGCCAGCC CCGATACCGA CCCCCAGGAA
ACCGCCGAAT GGCGCGACGC CCTGCAGGCC CTGGTGGCCA CGGCAGGGCC TGAGCGCGCG
CGCTTTCTGC TGGACGAGCT GAACCGGCTG GCCGGCCAAC TGCGCGTGGA CTGGCGCCCC
GGCCTGAACA CGCCCTACGT GAACACCGTG TCCGTGCAGG AGCAGGGGGT GTTCCCCGGC
GACCTGGCGA TCGAGGAGCG TCTGGCGTCC ATCATGCGCT GGAACGCGCT GGCCATGGTG
GTGCGCGCCA ACCAGGCCTA TGGTGAACTC GGCGGCCACA TTGCCAGCTA CGCCAGTGCG
GCCGACCTGT TCGAGAGCGG CTTCAACCAC TTCTTCCGCG CCCGCGAGGG TCTGGGCGAA
GGCCAGCACC GGGGCGACCT GGTGTTTTTC CAGCCGCACA GCGCGCCCGG CGTTTACGCG
CGCGCCTTCC TCGAAGGGCG TTTGAGCGAG CAGGACCTCA TGCACTACCG CCAGGAGATC
ACCGCCCCGG CGCAGGGCGC GCGTGGCCTC TCCAGCTACC CGCATCCCTG GCTCATGCCG
GACTTCTGGC AGTTCCCCAC CGGCTCCATG GGCATCGGCC CCATCAGCAG CATCTACCAC
GCGCGCTTCA TGCGCTACCT CACGCATCGC AACCTGCTGG ATTGCTCCGC ACGCAAGGTG
TGGGGCGTGT TCGGCGATGG CGAGATGGAC GAACCCGAAT CCATGAGCGC CCTCACGCTC
GCCGCGCGCG AGGGGCTGGA CAACCTCGTC TGGGTCGTCA ACTGCAACCT GCAGCGCCTG
GACGGCCCAG TGCGCGGCAA CGGCCGCATC ATCGACGAGC TGGAGCGCCT GTTCGCTGGC
GCGGGCTGGA ACGTGGTCAA GCTCGTCTGG GGCAGCGACT GGGACGGCCT GTTCGCCCGC
GACCTCACGG GCGCGCTGGT GCGCACGCTC GAAGGCACGG TCGATGGGCA AATGCAGACC
TTTGCCGCCA AGGATGGGCG CTACAACCGC GACCACTTCT TCGGCCAGAC CCCCGAACTG
GCCGCGCTGG CCCAGGGCAT GACCGACGAG CAGATCGACC GCTTGAAGCG CGGCGGGCAT
GACCTGGTGA AGATCCACGC GGCCTATGCT GCCGCCGCGC GCCACCGCGG CCAACCCACG
GTGATCCTCG CGCACACCAA GAAGGGCTAC GGCATGGGCC AGGCCGGCCA GGGCAAGATG
ACCACGCACA GCCAGAAGAA GCTCGACGAC GCCGACCTCA TCGAATTCCG CAACCGCTTC
AACCTGCCCT TGAGCGACGC TCAGGCCACG GGCCTGGCGT TCTACAAGCC GGGGGACGAC
AGCCCCGAGA TGCAGTACCT GCGCCGCCAA CGCCAGGCCC TGGGCGGCTA CCTGCCCCGG
CGCGAAACGG TGTGCGACGT GCTGCCCGTG CCGCCCCTCG CCAGCTATGC GCAGTTCGCG
CTGGCGGCCG ATGGCAAGGA AATGAGCACC ACCATGGCCT TCGTGCGCAT GCTCGGTACG
CTGCTCAAGG ACGTCACGCT CGGCCCGCGC ATCGTCCCCA TCGTGGCCGA CGAGGCACGC
ACCTTCGGCA TGGCCAACCT GTTCAAGCAG GTGGGCATCT ACAGCAGCGT GGGCCAGCGC
TACGCGCCCG AGGACATCGG CTCGGTGCTT TCGTACCGCG AGGCGCTGGA TGGGCAGATC
CTGGAGGAAG GCATCAGCGA GGCCGGTGCC ATCGCCAGCT GGACGGCCGC CGCCACCAGC
TACAGCGTGC ACGGCCTGGC CATGCTGCCG TTCTACATCT ACTACTCGAT GTTCGGCTTT
CAGCGCGTGG GCGACGCCAT CTGGGCCGCC GCCGATCAGC GCGCCCGCGG CTTCCTGCTG
GGCGCTACCT CGGGGCGTAC CACGCTGGGC GGCGAGGGCC TGCAGCACCA GGACGGCTCC
AGCCACCTCG CGGCGGCCAC CATCCCCAAC TGCAAGGCCT ACGACCCGGC CTTCGCGGGC
GAGCTGGCCG TGATCGTGGA CGCCGGCATG CGCGAGATGG TCGCCGAGCA GCGCGACGTT
TTCTATTACG TCACGCTCAT GAACGAGAAC TACGCCCAGC CGGACCTGCC GGCCGAGGCC
CATGCAGGGG TGCTGCGTGG ATGCTATGTA TTCAATAGCT ATCAGCGCTT GCTGGATGGG
CGCGGTGGCG CAAATTCATC TCAAGAAAAC GTGACCCTGC TGGGCTCCGG CGCCATCCTC
ACCGAGGTCA TAAAGGCGGC GCAACGGCTG GCCGATGAGG GAATCGCGGC CACCGTGGTC
AGCGTGACGA GCTGGAGCGA GCTGGCGCGC GACGGCATGG CCTGTGAGGC CGGGCGTGAC
AGGGGGGATG CAGGCGATGC CAAGCCCTGG CTTACGCAGG TACTGGAGGG AACGAGCGGC
CCGGTCATTG CCGCCACGGA CTATGTGCGG GCCGTGCCCG AATCGGTGCG CGCCTATGTG
CCCGCGGGGC GCCGCTACCG CGCGCTGGGC ACGGATGGCT TTGGCCGCAG CGACACGCGG
GCGGCGCTGC GTGCGTACTT TGGGGTCGAT GCCGCCAGCA TTGCGCAGGC GGCGCGGGCC
GCGCTGACGG GCGGTTGA
|
|---|
| Protein sequence | MNRHPISVCG AYSGAMNAPT PLATLATLAA AASPDTDPQE TAEWRDALQA LVATAGPERA
RFLLDELNRL AGQLRVDWRP GLNTPYVNTV SVQEQGVFPG DLAIEERLAS IMRWNALAMV
VRANQAYGEL GGHIASYASA ADLFESGFNH FFRAREGLGE GQHRGDLVFF QPHSAPGVYA
RAFLEGRLSE QDLMHYRQEI TAPAQGARGL SSYPHPWLMP DFWQFPTGSM GIGPISSIYH
ARFMRYLTHR NLLDCSARKV WGVFGDGEMD EPESMSALTL AAREGLDNLV WVVNCNLQRL
DGPVRGNGRI IDELERLFAG AGWNVVKLVW GSDWDGLFAR DLTGALVRTL EGTVDGQMQT
FAAKDGRYNR DHFFGQTPEL AALAQGMTDE QIDRLKRGGH DLVKIHAAYA AAARHRGQPT
VILAHTKKGY GMGQAGQGKM TTHSQKKLDD ADLIEFRNRF NLPLSDAQAT GLAFYKPGDD
SPEMQYLRRQ RQALGGYLPR RETVCDVLPV PPLASYAQFA LAADGKEMST TMAFVRMLGT
LLKDVTLGPR IVPIVADEAR TFGMANLFKQ VGIYSSVGQR YAPEDIGSVL SYREALDGQI
LEEGISEAGA IASWTAAATS YSVHGLAMLP FYIYYSMFGF QRVGDAIWAA ADQRARGFLL
GATSGRTTLG GEGLQHQDGS SHLAAATIPN CKAYDPAFAG ELAVIVDAGM REMVAEQRDV
FYYVTLMNEN YAQPDLPAEA HAGVLRGCYV FNSYQRLLDG RGGANSSQEN VTLLGSGAIL
TEVIKAAQRL ADEGIAATVV SVTSWSELAR DGMACEAGRD RGDAGDAKPW LTQVLEGTSG
PVIAATDYVR AVPESVRAYV PAGRRYRALG TDGFGRSDTR AALRAYFGVD AASIAQAARA
ALTGG
|
|---|
| |