Gene Ajs_1578 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAjs_1578 
Symbol 
ID4671533 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidovorax sp. JS42 
KingdomBacteria 
Replicon accessionNC_008782 
Strand
Start bp1631235 
End bp1636163 
Gene Length4929 bp 
Protein Length1642 aa 
Translation table11 
GC content69% 
IMG OID639838665 
Producthelicase domain-containing protein 
Protein accessionYP_985847 
Protein GI121593951 
COG category[K] Transcription
[L] Replication, recombination and repair 
COG ID[COG4646] DNA methylase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.149983 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATCTAT TCAGTGCATC GCCTCCCCCT GAGGCGGTCG CAGCCCCCAC CTCCTGTGCT 
GTCGGCGACC TGGAGCCGCC GCCCGCCGCA ACACCGCGTG CGAGCTGGCG CGTCATTGAC
GGCAAGAAGC CTGACGCTCC GCGCAGCCTG TGGCCGGCCC TCGGCCGCGA GCAGTTGCTC
GGACTGAACG GCAGTGTCAC GAAGTTCGAG GCCAACGTGG CCGCGATCCA GGTGCTGCAA
GGCCTCGAAG CTGGCCAGCA GCCCGCGAGC GCCGACCAGC GCCACCAGTT GGTCCGCTTC
ACCGGCTGGG GCGGCCTGCC CGCCGCCTTC AACCTCGAAG GCACGGATCC GTCCTGGCGC
GGCCGCGCCG AAGCGCTGCA GGCCCTGCTG CCCGCCGACG ACTACGCGTC GGCCCGGGCA
TCGGTCAACA ACAGCCACTA CACCGAGGTC CATGTGATCG AGGCCATGTG GCAGGCCGTG
GAGCGCTTCG GCTTCACCGG CGGGCGCGTG CTCGAGCCCG CGGCCGGCGT CGGCCACTTC
CTGGGCGCCA TGCCCCGCAC GCTCGCCGAG CGCAGCGCGG TCACCGCCAT CGAGATCGAC
CAGATTTCCG GCCGGTTGCT GCAGGCGCTG TATGCACCGC ATGGCGCCGA TGTGCGCATC
GCGCCGTTCG AGAAGGTGGC GCTGCCCGAG AACTGGTTCG ACCTGGTGAT CGGCAATGTG
CCGTTCGGCA ACTACCCGGT CGCTGATGCG AGCCACAAGC CGTACGCGCG GTTCCGCATC
CACAACTACT TCTTCGGGCG CGCGCTGGAC CTGGTGCGCC CTGGCGGGCT GGTGTGCTTC
ATCACCAGCA CCGGCACGAT GGAGGCACGC GACGACGCGG TGCGTGGGCA CGTGTCCTCC
CAGGCCGAGC TGCTCGGGGC CATCCGGCTG CCCAAGGGCG CCTTCGCCGG CATCGCCTCG
ACCGAGGTGC AGACCGACAT CCTGTTCCTG CGCAAGCGCC ATTCCGGCGA AGCGGTCAGC
GGCGACTGGC TGGACCGCAC GATGGTGCCG CAGGAACTGC TGCACCCGCG CTGCCCGCAC
AAGTACCTGC AGATCAATGC CTGGTACGCC AAGCGCCCGC AGTTCTGCAT CGGACGGGTC
ACACAGGAGA GCAACGGCTA CGAGGAGATC CCGACCGTCG TGTTCGAGGG CGACCTCGAG
CCGGCGCTGG CCGAGCGGGT GGCACTGCTG CCCAGTGGCG TCTACCAGCC GGCCGCGCCA
CGGGTGCTGG CACCGGTGCG CGCCGCCGTG CCGGCCGAGG CTGGCGCGCG GCCCGGAAGC
TTCCGCCTCC ACCAGGGGCG CGTGCATCGG GTCGAGGACG GCGCCCTGGT CGACGTCCAC
GACGGCCTCA ACGCCACCCA GCGCGCCCGC ATCGCGGGCC TGTGCGCGAT CCGCGACCAC
GCGCGGGCAC TGCTCGATGC GCAGCTCGCG CAGGACGGCG ACGAAGGGCT GGGCCACCTG
CAGTCCATGC TGGGCGGCAG CTACGACGCC TACGTCCAGC GCTACGGGTG CCTCAGCACT
CGGGCCAACG CGCTGGCGTT CCGGCGCGAC CCGGACTACC CGCTGCTGCT GTCGCTGGAG
CACTACGACG AGGAGTCGGA CACCGCCAGA AAGGCCGCGC TGTTCGCCCA GCGCACGCTG
CGGCGGGTTT CGGCCCCGGC ATCGGTCGGC GAGCCTGCCG AAGCGCTGGC AACGTCGGTG
CAGTGGCGCG GCCGGGTCGA ACCGGCCTAC ATGGCGCAAT TGCTGTCGGC GCCCGAGCAT
GAGGTGCTGG CGGCGCTGTC CGAGGCCGGC CAGATTTTCC TGGACCCGAC CGACGAGGCC
TGGAAGACCG CCGACGAGTA CCTGTCCGGC GACGTCAAGG AAAAGCTCAA GCAGGCCGAG
CTGTCCGGCG AGGGCTACCG CCGCAACATC GAGGCCCTGC AGCGCGTGCA GCCCGAGGAC
CTGCCGCCGG CATCGATCGA ACCGCGCCTC GGCGCGGTCT GGATTCCCGC CGGTGATGTC
GAGGCCTTCA TCCACGAAGT GCTCGAGATG AAGGACTGCT CGGTGGCGTA CTCGGCCGAG
GCAGGCGCCT GGTCGGTGAA ATACCCGGAC TGGGCCGCGC GCAACAACGT CAAGGTGACC
CAGGAATGGG GCACCCGGCG CATGAACGCC GTCGAACTGG TGCTGGCCGC ACTCAATGTG
CAGGTGCCGA CGGTGCGCGA CCCGCTGCCG GACTCGGATC GCTACATCGT CAATCAAGAC
GAAACGCTCG CCGCGCGCGA GAAGCTGGGC GCTCTGAAAG CGCGGTTCGC TGTCTGGGCC
TTCGAAGAAG CTGGACGCCG GGAACGGCTG TGCCGGATCT ACAACGACCT GTTCAACGCG
ACGCGGCCGC GAAAGTTCGA TGGCTCGCAC CTGAAGCTGC CGGGCTTCTC GCGCTGCTTC
ACGCTGCACC CGCACCAACT GGATTCGGTG TGGCGCATCG TGCAAACCGG CAACGTGGGC
CTGTTCCACG TCGTCGGCGC CGGCAAGACG GCGGTCTGCG TGATCGCGAG CATGGAGATG
CGGCGCCTGG GTTTCCTCTC GAAGCCCTGC CATGTGGTCC CGAACCACAT GCTGGCGTCC
TACACAGCCG AGTTCGTGCG CCTGTACCCG CAGGCCTCGG TGCTCATGGC AGCAAAGGAG
GATCTGGAAG GCGACCGCCG GCGCGAGCTG GTGTCGCGCA TCGCCACGGG CGATTGGGAC
GCGGTGGTCA TCACGCACTC GAGCTTCGAG CGCATCCGGA TGTCGCCGCA ATTCACTGAA
GACCACATCG GGGAGGTGAT CCATGAAATA GAGATGGCCA TCCGCGCCGA GCAAGGCAAT
GACAAGTCCA ACCGGATCGT CAAGCAGCTC GAAGTGCAGA AGAAGACCTG GAAGGTCCGG
CTGGAGAAGC TCCAGGCCGA TGCCAGGAAG GACGATCTGC TGACCTGGGA GCAGTTGGGC
GTTGACGGTC TGTTCGTCGA CGAGGCCCAC CTGCACAAGA ACCTGTTCCG GTTCACCAAA
ATGACGCGGG TCGCAGGCCT GCCGCTGACC AATTCGCAGC GTGCATTCGA TCTGTACTTG
AAATCGCGCT ACACGATGCA GCTGCACGGC AATGCGCAGC GCGGCGTAGT GTTCGCGACC
GCGACGCCGG TGGCCAACAC CATGGCCGAG ATCCACACGA TGCAGCGCTA CCTGCAGCCG
CGCCGCCTGG CGCAGCTCGG GCTGCAGCAG TTCGACGCCT GGGCCGCCAC CTTCGGGGAA
TCGGTGACTG CGCTGGAGAT CGCGCCGGAC GGCAGCGGCT ACCGCGTGCA CACGCGCTTC
GCGCGCTTCA TCAACGTGCC GGAGCTGATG GCCATCTTCG GCGAGGTCGC GGACATCCGC
ACCGCCGAGA TGCTGAACCT GCCGGTGCCG AAGCTGCGCG GCGGCAAGCC GCGCACCGTG
GCCTGCCCGG CGAGTCCAGC GCTCAAGGCC TACGTGCAGA CGCTGGTCAA GCGCGCCGAG
GCGATCCGCA ACGGCACGGT CAAGCCGACC GAGGACAACA TGCTCGCGGT CACGAACGAT
GGCCGCGCCG CCGCGCTGGA CTTCCGGCTG ATCGCGCCGA CGGCGCGCTT CGACTCGGAT
GGCAAGGTGG CCGCCTGCGC CCGCGAGGTG CTGGCGATCT GGCAGCGCAC GATGGACTTC
TGCGGCGCGC AACTGGTGTT CTGCGACCTG TCCAGCCCCA AGGGCGGCAA GGCCTTCAGT
GTCTACGAGG ACTTGCGCCA GCGCCTGGTG GATGCCGGTA TTCCCGAGAA AGAGATCGCG
TTCATCCACG ATGCGGAGAC CGACGCGCAG AAGGCCACGC TGTTCAAGGC GGTTCGCGAG
GGCCGCGTGC GCGTACTGCT GGGCTCGACC GGCAAGATGG GCGTGGGCAC CAACGTGCAG
ACGCGCCTCG TGGCACTGCA CCACCTCGAT GCGCCGTGGC GTCCCTGCGA CGTCGAGCAG
CGCGAGGGCC GCATCCTGCG GCAGGGCAAC GAGTGCGAGG AGGTCGAGAT CTTCCGCTAC
GTGACCGAGC AGAGCTTTGA TGCCTACAGC TGGCAGACGC TGGAGACCAA GGCACGCTTC
ATCGCGCAGG TGATGAGCGG GGACAAGGGC CTGCGCTCCA TCGAGGACGT GGAGCTCACC
ACGCTGAGCT ACGCGGAGGT CAAGGCGCTC GCCTCGGGCA ACCCCATGGT GATCGAGAAG
GCCGGTGTCG ATGCGGAGGT GGCCAAGCTC TCCACCCTGT TCTCGGTCTG GCGCAACCAG
CGCTGGGCCA ACGAGAGCGA GGTGGGACGG CTGCCCATGC TGATCGAGTC GCTGGAGCAG
AAGCTGGTGC TGCAGGCCGA GGATGTGGCC CTGGTGGCGC CCCAGACCAT GGCGCAGATC
GCCGTGGAGC TGGGAGGCCG GCGGATCGCC GGGCCGGATG CCGTGGGCGA CGCCTTGCGC
GAGCTCGTCA AAACCGCCCG CGCCGCCATC CAGGGCAGAG CCCTGCTATC GGGTCAAATC
CTGGGCCGCT TCGGCGGTTT CGAGCTGGGC CTGCAGGCCA TCGGCACCGA GGCGGTGCCG
GCGTTCTTCC TCGCGGGGCG CTGCCGCTAC GACGCCGAGC CCTACCAGAC CGGGCCCGGC
CTGGTGTCCG CGCTGCTGGC GGCGCTAGCT TCGGTCGGCG AGCAGCAGTC CAGGACGGGC
GAACAGCTCG CCCTGCGGCG CAAGCGGCTG GACGATCTCC AGCTGGAGCT GGCCCGGCCG
TTCGAGCACG AGGCGCGGCT GACCACCCTG CTGGTGCGCC AGCGCGAGCT GCTCAAACAG
CTCGACCTCG ACAAGGACGA GGTCGGCAAT GCCAGCCTGG ATGGAGAAGC GATGCGCCAA
GCGGCCTGA
 
Protein sequence
MDLFSASPPP EAVAAPTSCA VGDLEPPPAA TPRASWRVID GKKPDAPRSL WPALGREQLL 
GLNGSVTKFE ANVAAIQVLQ GLEAGQQPAS ADQRHQLVRF TGWGGLPAAF NLEGTDPSWR
GRAEALQALL PADDYASARA SVNNSHYTEV HVIEAMWQAV ERFGFTGGRV LEPAAGVGHF
LGAMPRTLAE RSAVTAIEID QISGRLLQAL YAPHGADVRI APFEKVALPE NWFDLVIGNV
PFGNYPVADA SHKPYARFRI HNYFFGRALD LVRPGGLVCF ITSTGTMEAR DDAVRGHVSS
QAELLGAIRL PKGAFAGIAS TEVQTDILFL RKRHSGEAVS GDWLDRTMVP QELLHPRCPH
KYLQINAWYA KRPQFCIGRV TQESNGYEEI PTVVFEGDLE PALAERVALL PSGVYQPAAP
RVLAPVRAAV PAEAGARPGS FRLHQGRVHR VEDGALVDVH DGLNATQRAR IAGLCAIRDH
ARALLDAQLA QDGDEGLGHL QSMLGGSYDA YVQRYGCLST RANALAFRRD PDYPLLLSLE
HYDEESDTAR KAALFAQRTL RRVSAPASVG EPAEALATSV QWRGRVEPAY MAQLLSAPEH
EVLAALSEAG QIFLDPTDEA WKTADEYLSG DVKEKLKQAE LSGEGYRRNI EALQRVQPED
LPPASIEPRL GAVWIPAGDV EAFIHEVLEM KDCSVAYSAE AGAWSVKYPD WAARNNVKVT
QEWGTRRMNA VELVLAALNV QVPTVRDPLP DSDRYIVNQD ETLAAREKLG ALKARFAVWA
FEEAGRRERL CRIYNDLFNA TRPRKFDGSH LKLPGFSRCF TLHPHQLDSV WRIVQTGNVG
LFHVVGAGKT AVCVIASMEM RRLGFLSKPC HVVPNHMLAS YTAEFVRLYP QASVLMAAKE
DLEGDRRREL VSRIATGDWD AVVITHSSFE RIRMSPQFTE DHIGEVIHEI EMAIRAEQGN
DKSNRIVKQL EVQKKTWKVR LEKLQADARK DDLLTWEQLG VDGLFVDEAH LHKNLFRFTK
MTRVAGLPLT NSQRAFDLYL KSRYTMQLHG NAQRGVVFAT ATPVANTMAE IHTMQRYLQP
RRLAQLGLQQ FDAWAATFGE SVTALEIAPD GSGYRVHTRF ARFINVPELM AIFGEVADIR
TAEMLNLPVP KLRGGKPRTV ACPASPALKA YVQTLVKRAE AIRNGTVKPT EDNMLAVTND
GRAAALDFRL IAPTARFDSD GKVAACAREV LAIWQRTMDF CGAQLVFCDL SSPKGGKAFS
VYEDLRQRLV DAGIPEKEIA FIHDAETDAQ KATLFKAVRE GRVRVLLGST GKMGVGTNVQ
TRLVALHHLD APWRPCDVEQ REGRILRQGN ECEEVEIFRY VTEQSFDAYS WQTLETKARF
IAQVMSGDKG LRSIEDVELT TLSYAEVKAL ASGNPMVIEK AGVDAEVAKL STLFSVWRNQ
RWANESEVGR LPMLIESLEQ KLVLQAEDVA LVAPQTMAQI AVELGGRRIA GPDAVGDALR
ELVKTARAAI QGRALLSGQI LGRFGGFELG LQAIGTEAVP AFFLAGRCRY DAEPYQTGPG
LVSALLAALA SVGEQQSRTG EQLALRRKRL DDLQLELARP FEHEARLTTL LVRQRELLKQ
LDLDKDEVGN ASLDGEAMRQ AA