| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_1483 |
|---|
| Symbol | |
|---|
| ID | 4670875 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax sp. JS42 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008782 |
|---|
| Strand | + |
|---|
| Start bp | 1537816 |
|---|
| End bp | 1540947 |
|---|
| Gene Length | 3132 bp |
|---|
| Protein Length | 1043 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 639838584 |
|---|
| Product | CzcA family heavy metal efflux protein |
|---|
| Protein accession | YP_985766 |
|---|
| Protein GI | 121593870 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG3696] Putative silver efflux pump |
|---|
| TIGRFAM ID | [TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTCGCGA AGATCATTGA CTGGTCAGGA AGAAACAGCT TCCTGGTGCT CCTGGCCACG
CTGTTTGTCA TTGTCGCAGG GGTATTCGCG GTGTTGCGAA CGCCTTTGGA CGCCCTGCCG
GACTTGTCCG ACGTGCAGGT CATCGTCTAC ACCGAATACC CTGGACAAGC GCCCCAGGTG
GTTGAGGATC AGGTCACCTA TCCCTTGACC ACCGCCATGC TGTCGGTACC CAAGTCCAAG
GTGGTGCGCG GCTTTTCGTT CTTTGGAGCG TCCTTCGTCT ACATCATCTT TGAGGATGAC
ACAGACATCT ATTGGGCGCG TTCGCGCGTG CTGGAATACC TCAATTTCGC ATCCAGCCGA
ATGCCCAAGG GGGTCACGCC GCAAATTGGC CCTGATGCCA CCGGTGTGGG TTGGGTCTAC
CAGTACGCTT TGATCGCCAA GGACCGGACG CTGGCCGAGT TGAGAACTTT GCAGGATTGG
TACCTGCGCT ACCAGCTGAC CAAGGCGCAT GGCGTCGCTG AGGTGGCATC CGTCGGTGGC
TTTGTCCAGA CCTACCAGAT TACCGTCGAC CCGGTGAAGC TGCGGGCCTA CGGCATTCCG
TTGGCCAAGG TGTCGCAGGT CGTGCGCGAC TCCAATCGTG ACGTCGGCGG CCGTGTGGTG
GAGATGGCCG AGACAGAGTA CATGGTGCGC GGAAAGGGCT ATCTGCGCGG CGCGGCGGAC
ATCGAGAACC TGGTCGTCAA GACCGAAAAA GGCACACCAG TATTGATTCG AGACATCGCT
CGCGTTGAAC TCGCTCCCGA TGAACGGCGC GGCCTGACCG AACTCAACGG GGAGGGGGAG
GTGGTCTCGG GCATCGCCAT GGCCCGCTAT GGCCAAAACG CCCTGGAAGT CATTCACAAC
CTGAAGGAGA AAATTACCGA AGTTTCGGCA GGGCTGCCGC AGGGCGTCAG CATCCAGGCT
GTTTACGACC GATCTGACCT GATTCATCGG GCCATCGATA CGCTCAAGCG AACGCTGCTT
GAGGAGAGCC TGATCGTTGC CCTGGTCTGC ATGGTCTTTC TCATGCACAT CCGTTCAGCC
CTCGTGGCTA TCTTGATGTT GCCCGTAGGG GTGCTGATCT CATTCATCGC GATGCGCTTG
CTGGGCATGA ATTCCAACCT GATGAGTCTG GGTGGTATCG CCATTGCGAT CGGTGCCATG
GTGGATGCGG CCATCGTCAT GATCGAGAAC GCCCATAAAC ACCTGGAGCG GCTCCCACCC
GAGCACAACA GCAAGCAGCG GGTCGAGGCC ATGATCGCCG CGTGCAAGGA GGTTGGCCCG
GCACTGTTCT TCTCGCTGCT GATCATCACC GTGTCGTTTC TGCCCGTGTT CACGCTCGAA
TCACAGGAGG GGCGCATGTT CTCACCGCTG GCGTTCACCA AGACGTTTTC TATGGCAGGA
GCGGCGCTGC TGTCGGTGAC GCTGGTGCCG GTGCTCATGA TGATTTTCAT TCGCGGACGC
ATCATGCCGG AGTCCCGTAA CCCGGTGAAC CGGTTCCTGA TCTGGGTCTA CCGACCCATC
ATCGCTGGCG TGATGCGCTG GAAGAAAGTG ACTATTGCTA TTGCCCTGGT CGTGCTTGGG
GTGTCGTTCT ACCCGGCCAG CAAGCTGGGG TCCGAATTCA TGCCGACACT CAATGAAGGC
ACTTTGCTCT ACATGCCTGC TTCGCTGCCG GGCATGTCGA TCACCAAGGC CGCCGAGTTG
CTTCAGACGC AAAACAAGAT CATCAAGAGT TTTCCAGAGG TTGAATCGGT CTACGGTAAG
GCAGGACGGG CCAACACGGC CACCGACCCG GCACCGACCG AGATGTTCGA GACGGTCATC
AACCTCAAGC CGGAGTCAGC GTGGCGATCT GGCATGACCA CCGACAAATT GATCGCCGAG
ATGGACAAGG CACTGCAATT TCCTGGCGTC TCCAATGCCT GGACCATGCC CATCAAGGCG
CGCATCGACA TGCTGTCCAC CGGTATCCGC ACACCCATTG GTATCAAGGT CTTCGGCAAG
GACTTGAACG AAATGGAACG CCTGGCGCGG GAGATCGAGA CCGTAGTGAA ATCTGTGCCC
GGCACCACCT CGGCATTCGC GGAGCGGATC ACAGGCGGCT TCTACCTGAA CATCGAGCCC
GACCGCGCCC AACTGGCACG CTACGGTCTG GCGGTGGGTG ATCTGCAGGA GGTCATTGGT
ACGGCGCTCG GCGGTGACAT GGTGACCACC ACGGTGGAAG GGCGAGAGCG TTTTGGCGTG
ACGGTTCGCT ACCCACGCGA ATTGCGGTCT GACCCGCAGC AGATCGCCCG TGAAGTGCTG
GTGCCGACGA TGGATGGAGC CATGGTTCCG CTGGGCCAGG TTGCCCGCGT GGAGGTGGCC
AAGGGCGCCC CGGGTATCCG TACCGAAAAT GGATTGTTGT CAGCCTACAT CTTCGTGGAC
ATCCGAGATC GTGACATCGG AGGCTACGTC GCCGAGGCGC GCAAAGCAGT GAACGAACAG
GTCAAATTCC CGCCTGGCTA CTACGCCACA TGGAGCGGTC AGTTTGAATC TATGGAGCGA
GCTATCGAAA AAATGAAACT CGTCGTGCCG GTAACGTTGT TGCTCATCTT CTTGCTGCTG
TACCTGAATT TCCGGCGCCT GACGGAGACA CTGATCGTCA TGCTGTCGGT GCCGTTCGCG
TTGGTCGGCG GAGTCTGGCT GATGTGGTGG CTTGGCTACA ACCTTTCTGT CGCGGTTGCG
GTGGGCTTCA TCGCCCTGGC CGGGGTGGCC GCTGAAACCG GAGTCGTCAT GCTGATCTAC
CTGGATCACG CCTGGGAGGA GATTAAGGAA AAACGCCGTT CTGAAGGGAA AGAGCCCGGG
GCTGCTGACC TTTACGAGGC CATCATGGAG GGGGCTGTTG AGCGAGTTCG TCCAAAGATG
ATGACGGTCG TTGCCATCAT GGCGGGCCTG CTGCCCATCA TGTGGGGAAC GGGAACCGGC
TCGGAAGTGA TGAGTCGCAT TGCCGCACCG TTGGTCGGTG GCATGATTTC CTCGACCGTA
CTGACGCTGG CCGTGATCCC CGCGCTCTAT GCTCTCGTCA AGCAAGTTGA ACTTCGGAGA
AAGCGAGCTT GA
|
|---|
| Protein sequence | MLAKIIDWSG RNSFLVLLAT LFVIVAGVFA VLRTPLDALP DLSDVQVIVY TEYPGQAPQV
VEDQVTYPLT TAMLSVPKSK VVRGFSFFGA SFVYIIFEDD TDIYWARSRV LEYLNFASSR
MPKGVTPQIG PDATGVGWVY QYALIAKDRT LAELRTLQDW YLRYQLTKAH GVAEVASVGG
FVQTYQITVD PVKLRAYGIP LAKVSQVVRD SNRDVGGRVV EMAETEYMVR GKGYLRGAAD
IENLVVKTEK GTPVLIRDIA RVELAPDERR GLTELNGEGE VVSGIAMARY GQNALEVIHN
LKEKITEVSA GLPQGVSIQA VYDRSDLIHR AIDTLKRTLL EESLIVALVC MVFLMHIRSA
LVAILMLPVG VLISFIAMRL LGMNSNLMSL GGIAIAIGAM VDAAIVMIEN AHKHLERLPP
EHNSKQRVEA MIAACKEVGP ALFFSLLIIT VSFLPVFTLE SQEGRMFSPL AFTKTFSMAG
AALLSVTLVP VLMMIFIRGR IMPESRNPVN RFLIWVYRPI IAGVMRWKKV TIAIALVVLG
VSFYPASKLG SEFMPTLNEG TLLYMPASLP GMSITKAAEL LQTQNKIIKS FPEVESVYGK
AGRANTATDP APTEMFETVI NLKPESAWRS GMTTDKLIAE MDKALQFPGV SNAWTMPIKA
RIDMLSTGIR TPIGIKVFGK DLNEMERLAR EIETVVKSVP GTTSAFAERI TGGFYLNIEP
DRAQLARYGL AVGDLQEVIG TALGGDMVTT TVEGRERFGV TVRYPRELRS DPQQIAREVL
VPTMDGAMVP LGQVARVEVA KGAPGIRTEN GLLSAYIFVD IRDRDIGGYV AEARKAVNEQ
VKFPPGYYAT WSGQFESMER AIEKMKLVVP VTLLLIFLLL YLNFRRLTET LIVMLSVPFA
LVGGVWLMWW LGYNLSVAVA VGFIALAGVA AETGVVMLIY LDHAWEEIKE KRRSEGKEPG
AADLYEAIME GAVERVRPKM MTVVAIMAGL LPIMWGTGTG SEVMSRIAAP LVGGMISSTV
LTLAVIPALY ALVKQVELRR KRA
|
|---|
| |