Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ajs_1040 |
Symbol | |
ID | 4674457 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidovorax sp. JS42 |
Kingdom | Bacteria |
Replicon accession | NC_008782 |
Strand | - |
Start bp | 1085191 |
End bp | 1087017 |
Gene Length | 1827 bp |
Protein Length | 608 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 639838160 |
Product | TRAP dicarboxylate transporter, DctM subunit |
Protein accession | YP_985352 |
Protein GI | 121593456 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG4664] TRAP-type mannitol/chloroaromatic compound transport system, large permease component |
TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.0428099 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAATTCA TCACAAGCAA TTACGCCCCC GTCATGTTCG GGAGCCTGAT CATCTTCCTG CTGCTGGGCT TCCCCGTGGC GTTCAGCCTG GGCGCCTGCG GCCTGCTGTT CGGCTTCCTG GGGATCGAGC TGGGGGTCTT TCCTTCGTCC GTGATGGCCT GGCTGCCGCA GCGCCTGATC GGCATCATGG CCAACGACAC GCTGCTGGCG GTGCCCTTCT TCACGCTCAT GGGCCTGATC ATGAAGCGCA GCGGCATGGC GGAGGACCTG CTCGACACGG TGGGCCAGGT GTTCGGCCCT TTGCGCGGCG GCCTGGCGCT GGCGGTGGTT TTCGTGGGCG CGCTGCTGGC GGCCACCACC GGTGTGGTGG CGGCCTCGGT GATCTCCATG GGCCTGATCT CGCTGCCCAT CATGCTGCGC TACGGCTACG ACCGGCGGCT CGCCAGCGGT GTGATTGCCG CATCCGGCAC CCTGGCCCAG ATCATTCCCC CATCACTGGT GCTGATCCTG ATGGCCGACC AGCTCGGCCG CAGCGTGGGC GAGATGTACA AGGGCGCATT CGTGCCCGCC TTCATCCTCG TCGGCCTCTA CGTGCTGTGG GTGGTCATCC TGGCCATCTT CAAGCCCCAG TCCGTACCCG CCCTGCCACC CGAGGCGCGC ATCTACCGTG AAGACAATGG CAGCTCCGGC TATGCCTCGC TGGCCGTCGT GATGGGCATC TCCACGGCAG CATCGATCTT CCTAGCCGCT CACATGGCCG ACGTGCATAC GTGGTGGACA GGCACCGAAG TGCTGGACGT GCCGACCGAT GAGAAGGTCG TCACCGCCAT GTGCGGCGGC ACCTTCATCG CGTTCGTCAT CGCGAGCATC AATCGCGTGC TCAAGCTGGG CATGCTCTCT CGCCTGGCCG AGCGCGTGAC CTTCGTGCTG ATTCCGCCAC TGCTGCTGAT CTTCCTGGTG CTGGGCACCA TCTTCCTGGG CATTGCCACA CCGACCGAAG GCGGCGCCAT GGGTGCCATG GCGGCGCTGG TCATGGGCTT CGCGCGCCGG CGCCTGGACA TGCCCCTGCT CAAGCAGGCG CTGGGCGCCA CTACGCGCCT GGCCAGCTTT GTGATGTTCA TCATGATCGG CGCCACCACG TTCAGCCTGG TGTTCCAGGC GGCCGATGGC CCGAAGTGGG TGGAGCACCT GCTGGCCAGC CTGCCCGGCG GACAGGTGGG CTTCCTGATC GTGGTGAACC TCATGATCTT CTTTCTGGCT TTCTTCCTGG ACTACTTCGA GCTGTCCTTC ATCGTGGTGC CGCTGCTGGG ACCCGTCGCC GACAAGATGG GCATCGATCT GATCTGGTTC GGCGTGCTGC TGGCGATGAA CATGCAGACC TCGTTCATGC ACCCGCCTTT CGGCTTCGCG CTGTTCTTCC TGCGCTCGGT GGCCCCGGAC AAGCCCTACA TCGACCGGGT GACGCACAAG GCCATCCAGC CCGTGACCAC CATGCAGATC TACAAGGGCG CCATTCCCTT CGTTCTGATC CAGCTGATCA TGGTGAGCCT GCTCATCGCC TTCCCGTCCA TCGTGACGGG CAGCCTGGAC AAAAAGGTGG AAGTGAACAT GGAAGCGGTG GGCGCGCAAA TGATGGATGC GCTCCAGGAT GCGGAGAGCT ACGGGGCCCC AGGCAACGAC CCGTTCGCAT CGCAGCCCGC TCCAGACGCC GAGCAGGCAC CGGCACCGGC ACCGGAGGGC GAGTTGGCGC CCCCTGCCGA CGGCGGCTAC GGCTCGGACG ACCCAGCCAA GGCGCTGCAG GACGCCATGG GCTCGGGCAG CAAGTAA
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Protein sequence | MEFITSNYAP VMFGSLIIFL LLGFPVAFSL GACGLLFGFL GIELGVFPSS VMAWLPQRLI GIMANDTLLA VPFFTLMGLI MKRSGMAEDL LDTVGQVFGP LRGGLALAVV FVGALLAATT GVVAASVISM GLISLPIMLR YGYDRRLASG VIAASGTLAQ IIPPSLVLIL MADQLGRSVG EMYKGAFVPA FILVGLYVLW VVILAIFKPQ SVPALPPEAR IYREDNGSSG YASLAVVMGI STAASIFLAA HMADVHTWWT GTEVLDVPTD EKVVTAMCGG TFIAFVIASI NRVLKLGMLS RLAERVTFVL IPPLLLIFLV LGTIFLGIAT PTEGGAMGAM AALVMGFARR RLDMPLLKQA LGATTRLASF VMFIMIGATT FSLVFQAADG PKWVEHLLAS LPGGQVGFLI VVNLMIFFLA FFLDYFELSF IVVPLLGPVA DKMGIDLIWF GVLLAMNMQT SFMHPPFGFA LFFLRSVAPD KPYIDRVTHK AIQPVTTMQI YKGAIPFVLI QLIMVSLLIA FPSIVTGSLD KKVEVNMEAV GAQMMDALQD AESYGAPGND PFASQPAPDA EQAPAPAPEG ELAPPADGGY GSDDPAKALQ DAMGSGSK
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