| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_0921 |
|---|
| Symbol | |
|---|
| ID | 4671816 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax sp. JS42 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008782 |
|---|
| Strand | - |
|---|
| Start bp | 969087 |
|---|
| End bp | 970331 |
|---|
| Gene Length | 1245 bp |
|---|
| Protein Length | 414 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 639838043 |
|---|
| Product | putative oxygen-independent coproporphyrinogen III oxidase |
|---|
| Protein accession | YP_985237 |
|---|
| Protein GI | 121593341 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0635] Coproporphyrinogen III oxidase and related Fe-S oxidoreductases |
|---|
| TIGRFAM ID | [TIGR00539] putative oxygen-independent coproporphyrinogen III oxidase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.00698977 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACCATCC CCATCCTCCC TGCCGCGCAG TCCGGCGCGC CGCTGCGCGA CGTGCAGCAC
TACATGCGCC CCGGCCTGCT GCAGCTGCCC AGCCTGCCGC CGCTGTCGCT GTACGTGCAC
CTGCCGTGGT GCCTGCGCAA ATGCCCGTAC TGCGACTTCA ACTCGCACGA GGCGCGCGGC
GGCATGGGCG GCGATGGCGG CGTGCCCGAA GCGCGCTATA TCGACGCCCT GCTGGCCGAC
CTGGAGGCCG CCCTGCCGCT GATCTGGGGC CGCACGGTGC ACAGCATCTT CATCGGCGGC
GGAACGCCCA GCCTGTTTGC GCCCGAGTCC ATCGACCGGC TGCTGGGCGA CATCCGCGCG
CGCCTGCGGT TGGACGCGGG CTGCGAGATC ACGCTGGAGG CCAACCCCGG CACGTTCGAG
AAGGAGCGCT TTCGCGCCTA CCGCGGCGCG GGGGTCACGC GGCTGTCCAT CGGCGTGCAG
AGCTTCAACG ACCGGCACCT GCAGGCGCTG GGCCGCGTGC ACAACCGCGC ACAGGCGCTG
GCTGCCGTGG AGGAAGCGGC GCAGGCGTTC GACACCTTCA ACCTCGACAT CATGTACGCC
CTGCCCGGCC AGACGCCGGC CGAGCTGGAC GAGGACATGC GCACCGCGCT CGCGCTGCAG
CCGCCGCACA TCTCCATCTA CCACCTGACC ATCGAGCCCA ACACCTACTT CGCCAAGTAC
CCCCCACCGC TGCCCGAGGA CGACGCAGCC TATGCCATGC TCGACCGCAT CACAGAACTG
ACGGGCGCGG CAGGCCTTGC ACGCTACGAG GTATCGGCCT ATGCACGCGA GGGCCACCAA
TGCGTGCACA ACCGCAACTA TTGGCAGTTT GGCGACTATC TGGGCATTGG CGCGGGCGCG
CACAGCAAGC TCAGCTTTGC GCACCGGGTG GTGCGCCAGG TGCGCCTGCG CGATCCGCAG
CTCTACATGG CCGGAGCACT CGCAGGGCGC GCCATCGCGC AAGACGACGA CGTGCGCCGC
GCGGACCTGC CGTTCGAGTT CATGCTCAAT GCGCTAAGGC TGCAGGAGGG TTTTGCGCTG
CAGGACTTCA CCGCCCGTAC GGGCCTGGCG ATCACGGCCA TAGCCGCTGG CCTGCAGCAG
GCCGAGGCGC AGGGCCTGAT CACGCGCGAC ATGGAGCGCG TGCGTCCCAC ACAGCGGGGC
TTTGATTTTT TGAGCGACCT GCAGGCGCTC TTCCTGGCGG ACTGA
|
|---|
| Protein sequence | MTIPILPAAQ SGAPLRDVQH YMRPGLLQLP SLPPLSLYVH LPWCLRKCPY CDFNSHEARG
GMGGDGGVPE ARYIDALLAD LEAALPLIWG RTVHSIFIGG GTPSLFAPES IDRLLGDIRA
RLRLDAGCEI TLEANPGTFE KERFRAYRGA GVTRLSIGVQ SFNDRHLQAL GRVHNRAQAL
AAVEEAAQAF DTFNLDIMYA LPGQTPAELD EDMRTALALQ PPHISIYHLT IEPNTYFAKY
PPPLPEDDAA YAMLDRITEL TGAAGLARYE VSAYAREGHQ CVHNRNYWQF GDYLGIGAGA
HSKLSFAHRV VRQVRLRDPQ LYMAGALAGR AIAQDDDVRR ADLPFEFMLN ALRLQEGFAL
QDFTARTGLA ITAIAAGLQQ AEAQGLITRD MERVRPTQRG FDFLSDLQAL FLAD
|
|---|
| |