| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_0742 |
|---|
| Symbol | gltD |
|---|
| ID | 4673386 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax sp. JS42 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008782 |
|---|
| Strand | + |
|---|
| Start bp | 785489 |
|---|
| End bp | 786967 |
|---|
| Gene Length | 1479 bp |
|---|
| Protein Length | 492 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 639837865 |
|---|
| Product | glutamate synthase subunit beta |
|---|
| Protein accession | YP_985062 |
|---|
| Protein GI | 121593166 |
|---|
| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG0493] NADPH-dependent glutamate synthase beta chain and related oxidoreductases |
|---|
| TIGRFAM ID | [TIGR01317] glutamate synthases, NADH/NADPH, small subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0648887 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGCAAGA CCACAGGTTT CATGGAATAC GAGCGCATCG AGGAGGGCTA CAAGCCCGTT
GGCGAGCGCC TCAAGCACTA CAAGGAATTC GTCATCGGCC TTGATGACGC CCAGGCCAAG
CTGCAGAGCG CCCGCTGCAT GGATTGCGGC ACGCCGTTCT GCCACAACGG CTGCCCGGTG
AACAACATCA TCCCGGACTT CAACGACCTC GTTTACCACC AGGACTGGAA GAGCGCGATC
GCGGTGCTGC ACAGCACCAA CAACTTCCCC GAGTTCACCG GCCGCATCTG CCCCGCACCC
TGCGAGGCCG CCTGCACGCT GAACATCAAC GACGACGCGG TGGGCATCAA GAGCATCGAG
CACGCCATCA TCGACCGCGC CTGGGAGCAC GGCTGGGTGC AGCCGCAGCC GGCTGCCCGC
AAGACGGGCA AGAAAGTGGC CGTGGTGGGC GCCGGCCCGG CGGGCCTGGC GGCCGCGCAG
CAACTGGCGC GCGCCGGGCA TGACGTCACG CTGTTCGAGA AGAACGACCG CGTGGGCGGC
CTGCTGCGCT ACGGCATCCC CGACTTCAAG CTGGACAAGG CGCACATCGA CCGCCGCGTG
GAGCAACTGG TGGCCGAGGG CGTGACGATC CGTACCGGCG TCTTCATCGG CGCGGCCAAG
GACGGTCTGG GCAAAGGCAG CAAGGTCACC AACTGGTCCA AGGAAACCAT CACGCCCGAG
CAGCTGCGCA AGGACTTCGA CGCCGTGCTG CTGACGGGTG GCGCCGAGCA GTCGCGCGAC
CTGCCCGTGC CGGGGCGCGA ACTGGACGGC ATTCACTTCG CGATGGAGTT CCTGCCGCAG
CAGAACAAGG TCAACGCGGG CGACAAGCTC AAGGGCCAGA TCCGCGCGGA CGGCAAGCAC
GTCATCGTCA TCGGCGGCGG CGACACGGGC AGCGACTGTG TGGGCACCAG CAATCGCCAT
GGCGCGGCCA GCGTCACGCA GTTCGAGCTG ATGCCCATGC CGCCAAGCCA AGAGAACAAG
CCCCTGGTGT GGCCCTATTG GCCGTACAAG CTGCGTACCA GCTCCAGCCA CGAGGAGGGC
TGCGAGCGCG CGTTCGCCAT CGCCACCAAG GAGTTCATCG GCGACGGCAA GAAGGTCACG
GGCCTCAAAA CCGTGCAGGT GGAGTTCAAG GATGGCAAGT TCATCGAGGT CCCCGGCACC
GAGAAGGAAT ACCAGGCCGA CCTGGTGCTG CTGGCCATGG GTTTCGTGAG CCCGGTGGCT
GCCGTGCTGG ACGCCTTCGG AGTGGACAAG GATGCGCGGG GCAATGCCCA GGCCACGACG
GACTTCACCG GCGGCTATGC GACCAGCGCG CCCAAGGTCT TCGCCGCCGG CGACATGCGC
CGCGGCCAGT CGCTGGTGGT CTGGGCCATC CGCGAAGGCC GCCAGGCCGC GCGTGCGGTG
GATGAATTCC TGATGGGGGA AAGCAGTCTG CCGCGCTGA
|
|---|
| Protein sequence | MGKTTGFMEY ERIEEGYKPV GERLKHYKEF VIGLDDAQAK LQSARCMDCG TPFCHNGCPV
NNIIPDFNDL VYHQDWKSAI AVLHSTNNFP EFTGRICPAP CEAACTLNIN DDAVGIKSIE
HAIIDRAWEH GWVQPQPAAR KTGKKVAVVG AGPAGLAAAQ QLARAGHDVT LFEKNDRVGG
LLRYGIPDFK LDKAHIDRRV EQLVAEGVTI RTGVFIGAAK DGLGKGSKVT NWSKETITPE
QLRKDFDAVL LTGGAEQSRD LPVPGRELDG IHFAMEFLPQ QNKVNAGDKL KGQIRADGKH
VIVIGGGDTG SDCVGTSNRH GAASVTQFEL MPMPPSQENK PLVWPYWPYK LRTSSSHEEG
CERAFAIATK EFIGDGKKVT GLKTVQVEFK DGKFIEVPGT EKEYQADLVL LAMGFVSPVA
AVLDAFGVDK DARGNAQATT DFTGGYATSA PKVFAAGDMR RGQSLVVWAI REGRQAARAV
DEFLMGESSL PR
|
|---|
| |