| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_0729 |
|---|
| Symbol | |
|---|
| ID | 4673408 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax sp. JS42 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008782 |
|---|
| Strand | - |
|---|
| Start bp | 766566 |
|---|
| End bp | 768950 |
|---|
| Gene Length | 2385 bp |
|---|
| Protein Length | 794 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 639837852 |
|---|
| Product | 1A family penicillin-binding protein |
|---|
| Protein accession | YP_985049 |
|---|
| Protein GI | 121593153 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG5009] Membrane carboxypeptidase/penicillin-binding protein |
|---|
| TIGRFAM ID | [TIGR02074] penicillin-binding protein, 1A family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.239456 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCACAGC CTCCCGACAG AACATCTTCC CCGCCCACAT CCTCAATGCC ACGCGCCGTG
CGCTGGCTTC TGCTGGGGTT CACGTGGATC CTTGGCCTGG GCGTCGCCGC AACGTTGACC
GGTGCTCTCG CCATCGGACT GGGCCTTGCG GTGGCATATC CCAATCTGCC TGATGTGTCC
GATCTGGCGG ACTACCGTCC TAAGCTACCC CTGCGGGTGT ACTCCGCAGA AGGCGCATTG
CTGGGAGAGT TCGGTGAGGA GCGGCGCAAC TTGACGCCCA TCCAGGACAT CCCCCCCGTG
ATGACCAATG CAGTGTTGGC GATCGAAGAC GCACGCTTCT TCCAGCACGG GGGCGTGGAC
TACAAAGGGG TGTTGCGCGC TGCGCTGGCT AATCTGGGAC GCGTAAAAAG CCAGGGGGCT
TCCACTATTA CCATGCAAGT GGCGCGAAAT GTTTATCTTT CTTCCGAAAA AACATTCACC
AGAAAAATTT ACGAAATATT ACTCACATTT AAGCTTGAGC ATCTGTTAAC AAAAAACCAG
ATTCTCGAGA TCTACATGAA CCAGATTTAT CTGGGAAATC GCGCGTATGG ATTTGCAGCA
GCCGCAGAAA CCTATTTTGG CAAGCCGCTG AAGTCCATAT CCATTGCCGA AGCAGCCATG
CTTGCAGGCC TTCCGAAAGC CCCATCCGCT TACAACCCCA TCTCCAACCC CAAGCGCGCA
AGGATCCGGC AGCTGTACAT CATTGATCGC ATGCTGGAAA ACGGCTTCAT CACTGCCGAG
GAAGCCACTG CTGCAAAGCA AGAGGATCTC AAGCTGCGCT CGTCGACGGA TTCGACCCGC
ATCCATGCGG AGTACGTGGC CGAGATGGCG CGTCAACTCA TCTACGCGCA GTACGGCCCC
GAGGCATACA CGCGCGGATT GAATGTATAC ACCACGCTGA ATGCCGGCGA GCAGGAGACA
GCCTACACCG CGTTGCGCAA AGGCATCATG GACTACGAGC GCCGACAGCA CTATCGCGGG
CCTGAGCGGT TTGTCAGCCT GCCCTCCGCG TCTGAGGAGA CCGAAGACGC CATCGACGAC
GCTCTGGCCA ACCACCCGGA TAACGGCAAT GTGCTCGCCG CGGTCGTGCT GGAGGTCAAC
GCCAAGAGGA TTCTGGCGGC CCGCGCCGAT GGCGAACAGA TCGAGATCAC GGGCGAAGGC
CTCAAGCCAG CGCAGTCCGG ACTCAGCGAG AAAGCCCCGC CCAACATCAA ACTGCGCCGG
GGCGCGGTCA TCAGGGTCGC ACAAACACCC AAGAAGACTT GGGAAATCAC CCAGCTTCCT
GAGGTGGAAG GTGCTTTCGT GGCCATCGAT CCGCGTTCCG GTGCCATCCG TGCGCTGGTG
GGCGGCTTTG ACTTCGACAA GAACAAGTTC AACCATGTCA CCCAGGCCTG GCGCCAGCCA
GGTTCAGCGT TCAAGCCGTT CATCTACTCC GCCGCTCTGG AAAAGGGCTT CACACCTGCC
ACGGTGATCA ACGATGCTCC CCTGTTCTTC AGTGCGGGCG TGACAGGCGG GCAACCCTGG
GAGCCCAAGA ACTACGATGG CAAGTACGAC GGTCCCATGA CCATGCGCGC AGGGCTTGCC
CGCTCCAAGA ACGTCGTTTC CATTCGCATC CTGCAGGCTG TCGGCCCCAA GAACGGGCAG
GACTGGGTGA CCCGTTTCGG ATTCGAAGCC GACAAGCATC CCCCCTATCT GACGATGGCG
CTGGGCGCAG GCTCTGTCAC CCCGATGCAG CTTGCTTCGG CCTACGCGGT GTTTGCCAAC
GGCGGCTACC GCATCAACCC CTATCTCATC ACCCGTGTCA CGGACCACAA GGGACGCATC
CTGTCGGATT TCCAACCTCC CGCCGTCACA GACAACCCCC GCGCCATTGA GCCACGCAAC
GCGTTCATCA TGAACAGCAT GCTTCAGGAA GTCGCGCGCT CCGGCACGGC GGCACGTGCA
CAGGCCACGC TCAAACGCCC CGATATCTAT GGCAAGACAG GAACGACCAA TGACGCAGTC
GATGCGTGGT TTGCGGGCTT CCAGCCCACG CTGGCGGCTG TGACGTGGAT CGGTTACGAC
ACGCCGCGCA ACCTCGGAAG CCGTGAGACC GGTGGCGGAC TCAGCCTGCC GGTCTGGATC
AGCTTCATGG AAAAAGCGCT TAAGGGCGTC CCTGTGGCAG AGCCCACCGT GCCCGCTGGC
GTCGTGAACG TGAGTGGCGA ATGGTTCTAC GAAGAATATG CACGCAACGC GGGCGTCGCC
AGTGTGGGTA TGGAGAGCGC CACTCCCACC GACGGTGCGC CGGCTCCGGG AACACCGCCT
CCACCCGAAG AGCGCAACCG CATCCTCGAC CTATTCCGTA ATTAA
|
|---|
| Protein sequence | MPQPPDRTSS PPTSSMPRAV RWLLLGFTWI LGLGVAATLT GALAIGLGLA VAYPNLPDVS
DLADYRPKLP LRVYSAEGAL LGEFGEERRN LTPIQDIPPV MTNAVLAIED ARFFQHGGVD
YKGVLRAALA NLGRVKSQGA STITMQVARN VYLSSEKTFT RKIYEILLTF KLEHLLTKNQ
ILEIYMNQIY LGNRAYGFAA AAETYFGKPL KSISIAEAAM LAGLPKAPSA YNPISNPKRA
RIRQLYIIDR MLENGFITAE EATAAKQEDL KLRSSTDSTR IHAEYVAEMA RQLIYAQYGP
EAYTRGLNVY TTLNAGEQET AYTALRKGIM DYERRQHYRG PERFVSLPSA SEETEDAIDD
ALANHPDNGN VLAAVVLEVN AKRILAARAD GEQIEITGEG LKPAQSGLSE KAPPNIKLRR
GAVIRVAQTP KKTWEITQLP EVEGAFVAID PRSGAIRALV GGFDFDKNKF NHVTQAWRQP
GSAFKPFIYS AALEKGFTPA TVINDAPLFF SAGVTGGQPW EPKNYDGKYD GPMTMRAGLA
RSKNVVSIRI LQAVGPKNGQ DWVTRFGFEA DKHPPYLTMA LGAGSVTPMQ LASAYAVFAN
GGYRINPYLI TRVTDHKGRI LSDFQPPAVT DNPRAIEPRN AFIMNSMLQE VARSGTAARA
QATLKRPDIY GKTGTTNDAV DAWFAGFQPT LAAVTWIGYD TPRNLGSRET GGGLSLPVWI
SFMEKALKGV PVAEPTVPAG VVNVSGEWFY EEYARNAGVA SVGMESATPT DGAPAPGTPP
PPEERNRILD LFRN
|
|---|
| |