| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_0311 |
|---|
| Symbol | |
|---|
| ID | 4673526 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax sp. JS42 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008782 |
|---|
| Strand | + |
|---|
| Start bp | 316483 |
|---|
| End bp | 318162 |
|---|
| Gene Length | 1680 bp |
|---|
| Protein Length | 559 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 639837442 |
|---|
| Product | ATP-dependent DNA ligase |
|---|
| Protein accession | YP_984641 |
|---|
| Protein GI | 121592745 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1793] ATP-dependent DNA ligase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.194095 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGGCCT TTGCCGCGCT CTACCAGGCG CTGGATGCCA GCACGTCCAG CCTCGCCAAG
CAGGCCGCGC TGCGCGACTA TCTGCGGGGT GCGCCACCCG AGGATGCCGC CTGGGCCGTC
TACTTCCTCG CGGGTGGCAA ACCACGCCAA CTCGTGCCCA CCAAGCTGCT GCGCGCGGTG
GCGCGCGAGG CGGCGGGGTT GCCGGAATGG CTGTTCGACG AAAGCTACGA GGCTGTGGGC
GATCTGGCCG AGACCATCGC ACTGCTGCTG CCCCCGCCCA CGCAGGCACA CGCCCTGGGG
CTGGCCGCAT GGATGCGCGA ACACCTCTTG CCGCTGCGCG GCCTGGCGCC CGACACCCAG
GCTGAACGGC TGGGTGCGCA ATGGGCGCGG CTGGCTCCCG AGGAGCGGCT GGTGTACTTC
AAGCTCATCA CGGGGGCCTT CCGCGTGGGC GTGTCGCGCT TGCAGGTCAC GCAGGCGCTC
GCGGCCGTGA GCGGCGTGGA CGCCAAGCGC ATCGCCCAGC GCCTCATGGG CTACACGCAC
GTGGGCGCGC AGCCCGGGGC GGCTGACTAC CAGCGCCTCG TGGCGCCCCA GGGAGACAGT
GCGGGCGCGC AGGCTGCGGA GGCCCAGGGC CATCCCTATC CCTTCTTTCT GGCGCACCCG
CTGCAGCTGC CGGTGGCGCA GTTTGACGCC GCGCTCGGCC CGCCGGCGGA CTGGATCGTG
GAATGGAAGT GGGACGGCAT CCGCGCCCAG CTCGTGCGGC GCGCTGGCGC CACTTGGCTG
TGGTCGCGCG GGGAGGAGCT GGTGACCGAT CGCTTCCCCG AACTGCAGGC GCTGGGCGAC
GAAGCCCTGC CCGACGGCAC GGTGCTCGAC GGCGAGATCG TCGTCTGGCA GCCTGAGCGA
GCGGATGCGC CGGCGCAGCC GCGCCCGTTT GCCGACCTGC AAAAGCGCAT CGGCCGCAAG
TCGCTGGGCC CCAAGCTGCT GCGCGAGGTG CCCGTGGTGC TGTTGGCCTA CGACCTGCTG
GAGGAGCACG GCCAGGACCT GCGCGGCCTG CCGCTGCAGG CGCGGCGCGC GCGGCTGGAC
GCGCTGCTGG CGCGCACCGA CCACCCGGCG CTGGTGCCCA GCCCGGTGCT GCAGGGACAG
AGCTGGGCAG AACTGGCCCG CCTGCGGGAC AGCGCGCGTG CCCTGGGCGT GGAGGGCATG
ATGCTCAAAG GGCGCACGGC GCACTATGGT GTGGGCCGCA CGCGGGACGT GGGTATCTGG
TGGAAGTGGA AGATCGACCC GATGAGCGTG GACGCCGTGC TCATCTATGC GCAGCGCGGC
CATGGGCGCC GCGCCAGCCT GTACAGCGAC TACACGTTCG CCGTGTGGAG TGCGCCGCAG
GGCACCGAGG GGCGCACGCT GGTGCCGTTT GCCAAGGCGT ATTCGGGCCT CACCGATGCC
GAGATGGCGA GGGTGGACGC CATCATCCGC AAGACCACGG TGGAGAGCTT CGGCCCGGTG
CGCAGCGTGC GGCCCACGCT GGTGTTCGAA CTGGGTTTTG AGGGCATAGC GCGCAGCGCG
CGGCACAAGA GCGGCATCGC CGTGCGCTCC CCGCGCATGC TGCGCTGGCG TGAAGACAAG
CCGGTGGACG AAGCCGATTC GCTGGATACG CTGGCAGCGC TGTTGCCTGC TACGCCCTGA
|
|---|
| Protein sequence | MQAFAALYQA LDASTSSLAK QAALRDYLRG APPEDAAWAV YFLAGGKPRQ LVPTKLLRAV
AREAAGLPEW LFDESYEAVG DLAETIALLL PPPTQAHALG LAAWMREHLL PLRGLAPDTQ
AERLGAQWAR LAPEERLVYF KLITGAFRVG VSRLQVTQAL AAVSGVDAKR IAQRLMGYTH
VGAQPGAADY QRLVAPQGDS AGAQAAEAQG HPYPFFLAHP LQLPVAQFDA ALGPPADWIV
EWKWDGIRAQ LVRRAGATWL WSRGEELVTD RFPELQALGD EALPDGTVLD GEIVVWQPER
ADAPAQPRPF ADLQKRIGRK SLGPKLLREV PVVLLAYDLL EEHGQDLRGL PLQARRARLD
ALLARTDHPA LVPSPVLQGQ SWAELARLRD SARALGVEGM MLKGRTAHYG VGRTRDVGIW
WKWKIDPMSV DAVLIYAQRG HGRRASLYSD YTFAVWSAPQ GTEGRTLVPF AKAYSGLTDA
EMARVDAIIR KTTVESFGPV RSVRPTLVFE LGFEGIARSA RHKSGIAVRS PRMLRWREDK
PVDEADSLDT LAALLPATP
|
|---|
| |