Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ajs_0262 |
Symbol | |
ID | 4672385 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidovorax sp. JS42 |
Kingdom | Bacteria |
Replicon accession | NC_008782 |
Strand | - |
Start bp | 277003 |
End bp | 278220 |
Gene Length | 1218 bp |
Protein Length | 405 aa |
Translation table | 11 |
GC content | 73% |
IMG OID | 639837393 |
Product | secretion protein HlyD family protein |
Protein accession | YP_984592 |
Protein GI | 121592696 |
COG category | [V] Defense mechanisms |
COG ID | [COG1566] Multidrug resistance efflux pump |
TIGRFAM ID | [TIGR00998] efflux pump membrane protein (multidrug resistance protein A) |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.00123427 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | TTGTCCACCA TGACCGCAAC TCCCTCCACC CCTTCCACCG CGTCGAAGGC TTCCCGCCGC AAGGCACTGT TCACCCTGGC CGGCGTCGTA GTGCTCGCCG GCTGCGCCTG GGGCCTGTAC GACTGGCTGG TCGCCAGCCA CTATGAGCAC ACCGACAACG CCTACGTGCA GGGCAACGTC ATCCAGATCA CGCCGCAGAC CGGCGGCACG GTGATGTCCA TCCTGGCCGA CGACACCGAC TTCGTGCGCG CCGGCGCCGC GCTGGTGCAG TTGGACCCAG CCGACGCGCG CGTGGCGCTG CAGCAGGCCG AGGCCAACCT GGCGCAGGCC GTGCGGCAGA CACGCACGCT GTACGCCAAC AACAGCGCCC TGGCCGCGCA GGTGCGCCTG CGCGAGGCCG AGGCCGCACG CGCCCAGGCC GAGATCGCGC GCGCCGAGGA CGACCTGCGC CGCCGCCAGG CCCTGACCGG CGAGGGCGCC GTCTCGCAGG AGGAACTGCG CCACGCGCAG AGCCAGCTGC AGACCGCGCG CACGCAGTTG GCCGCTGCGC AGGCAGGCGT GGCCGCCGCG CGCGAGCAGC TCGCCAGCAA CCAGTCGCTC ACCCAAGGCG TGGCCGTGGC GCAGCACCCC AGCGTGCAGG CCGCAGCCGC CAAGGTGCGC GAGGCCTACC TGGCCGATCG CCGCACCGCC CTGCCCGCAC CCGTGGACGG CTACGTGGCG CGGCGCACGG TGCAACTGGG CCAGCGCGTG GCCGCGGGCA CGCCGCTGAT GACCATCGTG CCGCTGCGCG AGGTCTGGGT GGACGCCAAT TTCAAGGAGA ACCAGCTGCG CAACCTGCGC CTGGGCCAGC GCGCCACGCT CGTCGCCGAC CTGTACGGCA AGAAGGTGGA ATACACCGGC ACCGTGGCCG GGTTGGGCGT GGGCACGGGC GCGGCCTTCG CGCTGCTGCC GGCGCAGAAC GCCACCGGCA ACTGGATCAA GGTGGTGCAG CGGGTGCCCG TGCGCATCGC GCTGGATGCC GGGCAGCTGG CCGAGCACCC GCTGCGCGTG GGCCTGTCGA TGAACGTGAG CGTGGACACG CAGGACCGCA GCGGCCCGGC GCTGGCCGAT GCGCCGCGCA AGGAAGCGGT GGCCAGCACG GCCGTGTACG ACGCGCTGGA CAAGGGTGCC GATGCCGACG TGGCGCGCAT CATCCGCGCC AACCTGGGCA CGCTCTGA
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Protein sequence | MSTMTATPST PSTASKASRR KALFTLAGVV VLAGCAWGLY DWLVASHYEH TDNAYVQGNV IQITPQTGGT VMSILADDTD FVRAGAALVQ LDPADARVAL QQAEANLAQA VRQTRTLYAN NSALAAQVRL REAEAARAQA EIARAEDDLR RRQALTGEGA VSQEELRHAQ SQLQTARTQL AAAQAGVAAA REQLASNQSL TQGVAVAQHP SVQAAAAKVR EAYLADRRTA LPAPVDGYVA RRTVQLGQRV AAGTPLMTIV PLREVWVDAN FKENQLRNLR LGQRATLVAD LYGKKVEYTG TVAGLGVGTG AAFALLPAQN ATGNWIKVVQ RVPVRIALDA GQLAEHPLRV GLSMNVSVDT QDRSGPALAD APRKEAVAST AVYDALDKGA DADVARIIRA NLGTL
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