| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_0146 |
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| Symbol | |
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| ID | 4674197 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidovorax sp. JS42 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008782 |
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| Strand | + |
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| Start bp | 161755 |
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| End bp | 163134 |
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| Gene Length | 1380 bp |
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| Protein Length | 459 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 639837278 |
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| Product | sigma-54 dependent trancsriptional regulator |
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| Protein accession | YP_984477 |
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| Protein GI | 121592581 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 0.742059 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCATTTG TGACACCATA TGTCACCATG GCCGACATCC CTGATCTTTC CCCCACCCCG
GCGCAGGCGG CGCAGACCGC GCTGCTGGCC TCCTGGCTGG AGGGGCTGCC CGAGCCGCAC
ATCCTGTTCG ACCGCGGCTA CCGCATCGTG GCCGCCAACG GCGCCTACCG TCGCCAGTTC
GGCCAGGGCG CGCCGGTGGT GGGGCGCACC TGCCATGCGG TCTCGCACCA TTCGCCCGTG
CCGTGCGACC AGGCGGGCGA GACCTGCCCG CTGGCGCGCT CGCTCTTCAG TGGCCAGCGC
GAGCGCGTGC TGCACCTGCA CCACACCCCG GCGGGCGAGG AATACGTGCA GATCGAACTG
GTGCCGCTGC GCGACGAGGC GGGGCAGCCC CAGTACTTTC TGGAGAAGAT GGAGCCGCTG
CGCATTGCCC AGGGGCAGCC GGGCGCGCCG GGCATGATCG GGCGCGCGCC CGCGTTCCAG
GCCGTGCTGG AGCTGATCGC GCGCGTGGGC CCGTCGCAGG CCAGCGTGCT GCTGCTGGGC
GAGTCGGGCA CGGGCAAGGA GTTGGCCGCG CGCGCCGTGC ACGAGGCCAG CCCCCGCGCG
GGGCGGCCGT TGGTGGTGGT GGACTGCGCC AGCCTGCCCG AGACGCTGTT CGAGAGCGAA
CTGTTCGGCC ACGAGCGTGG CGCCTTCACC GGCGCCCATG CCGCACGCGC CGGCCTGGTG
GAGGCGGCGC ACGGCGGCAC GCTGTTCCTG GACGAGGTGG GCGACATCCC GCTCACCATG
CAGGTCAAGC TGCTGCGTTT GCTGGAAAGC GGCACCTACC GCCGCGTGGG CCACACCGAG
CTGCGCCGCG CGGACATCCG CCTGGTGGCG GCCACCCACC GCGACCTGCG CGCCATGGTG
CGCGAGGGGC GGTTTCGCCA GGACCTGTAC TACCGCCTGA GCACCTTTCC CATCCAGCTG
CCCGCGCTGC GCGAACGCCC GCAGGACATT CCGCTGCTGG CGGAATCGCT CTTGCAGCGC
GTGGCCGGGG GGCGGGGCCT GGTGCTTGCG CCCGCGGCGC TGCGCCGGCT GGCGCAGCAC
CCCTTCCCCG GCAACGTACG CGAGCTGCGC AACGTGCTGG ATCGTGCCGC GCTGCTGACT
GACGGCGCGG TGGTGGCCGC CCATACGATC GAGCGCGCGC TCTCGTTCGA TGCGCCCGCG
GCGGCGCCGG CGCGCGCTGC GCAGCAGCCC GACCACGCCA CCCTGCGTGA CATCGAATCC
GAGGCCCTGC GCGCGGCGCT GGCGGGGGGG GCCGCGTCGC GTCGCGAATT GGCGCGCGCC
CTGGGGGTCA GCACGCGCAC GCTGTACCGC AAGCTGCGAC TGTTACGGGA GCAGGGCTGA
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| Protein sequence | MPFVTPYVTM ADIPDLSPTP AQAAQTALLA SWLEGLPEPH ILFDRGYRIV AANGAYRRQF
GQGAPVVGRT CHAVSHHSPV PCDQAGETCP LARSLFSGQR ERVLHLHHTP AGEEYVQIEL
VPLRDEAGQP QYFLEKMEPL RIAQGQPGAP GMIGRAPAFQ AVLELIARVG PSQASVLLLG
ESGTGKELAA RAVHEASPRA GRPLVVVDCA SLPETLFESE LFGHERGAFT GAHAARAGLV
EAAHGGTLFL DEVGDIPLTM QVKLLRLLES GTYRRVGHTE LRRADIRLVA ATHRDLRAMV
REGRFRQDLY YRLSTFPIQL PALRERPQDI PLLAESLLQR VAGGRGLVLA PAALRRLAQH
PFPGNVRELR NVLDRAALLT DGAVVAAHTI ERALSFDAPA AAPARAAQQP DHATLRDIES
EALRAALAGG AASRRELARA LGVSTRTLYR KLRLLREQG
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