| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_0088 |
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| Symbol | |
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| ID | 4673273 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidovorax sp. JS42 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008782 |
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| Strand | - |
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| Start bp | 93706 |
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| End bp | 97032 |
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| Gene Length | 3327 bp |
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| Protein Length | 1108 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 639837220 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_984419 |
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| Protein GI | 121592523 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0221086 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCACCCCG CCCACCGCCA GGAGTTCCGC CAGTCCCTCA TCTGGTTCGC CGTGCTGCTG
GTCAGCCTGT GGATGTTGAA GACCCTGCCC GCGCCGGATG CCGCGCGCGG CATGGCGGGC
TACTTGCCGC TGCACACCGC GATGGAGGTC GTGTCCATCG GCGTGGCAGC AATGGTGTTC
AGCATCAGTT GGGCCACGCA AAAGTACCGA CCCAACGGGC GGGTGCTGGT CCTCGGCCTG
GGGCTGCTGG GCGTGGCGGT GCTGGACCTG ACCCACAGCC TGTCCTACGC CGGCATGCCG
GACTTCGTGA CCCCCAGCGA CCCGGAAAAG GCCATCAACT TCTGGCTGGC CGCGCGCGCG
CTGGCGGCGC TGGCCCTGCT GTGGGCCGCG TTATGGCCCC ACCGCTGGAA TGAATGGCTG
GGCCGCCGCT CGCGCTACGC GGGGCTGTTG TGGGTGGCGC TGCTGGTGGG CGCGGTGCAC
TACGTGCTGC TGGGGCATCC GCAGTGGCTG CCCCGCACCT TCACGCCCGA GGCAGGGCTC
ACGCCCTTCA AGGTCCGTTT CGAATACGCG CTGGCAACCG CGTACGTGCT GGCGGGGGTG
GGCTTCCTCA CGCAACTGCG CCATGCGCGC GAGTTCGGTC TGTCGCACCT GGCGCTGGCA
TCGTTCACCA TGGCCATGAG CGAGATCTTC TTCACGCTCT ACGCCAACGT GACCGATGTG
TACAACGTCG CCGGCCACTT CTACAAGATC CTGGCCTATG GCTTCCTGTA CCGCGGCCTG
TTCGTGGAAA CGGTGCAGAT CCCGTACCTG GACCTGCGCG CCGCCGAGGC CCGGCAGCGG
GCCACGCTGA ACACGCTGCC CGACCTGCTG TTCGAGGTGG ACCGCAAGGG GGTGTACCTC
GCGGTGCACG CCAACGAGAC CAGCAAGCTC CTGACCCCGC TGCCCCAGTT GCTGGGAAAA
ACGCTGGACG AGGCGCTGCC GCCGGCGGCG GCCGCGCAGT GTTTCGAGGC ACTGGCGGAG
GCTGAACGCA CGGGCATGAG CCGCGGCCAG CGCATCACGT TGCCGCTGCC CCTGGGCGAG
CGGCATTTCG AGCTGTCCGT CTCCCGCAAA TCCGCGGTCG CGGGCCAGCC CGACACCTTC
CTGATGCTGT CGCGCGACAT CACGCCCACC GTGGAGAACG AGGAGCGCAT TCGCTCCGAG
GCCGGCCTGA ACGCCGTCCT GCTGGACCTG CAGCAGCACG ACATCCACCA GCCCGAGGCA
GACCTGCTGC GGCGCGGCCT GGCGCATGCC CAGACCCTGA CCGGCAGCGC GCTGGCCGTG
CTGTACTTCG TGCACGACGA CGCTCGCGGC ACCTCGCTGG CCGCCTGCTT GCACGAAAAC
GCCCCGCCCG ACATGCCGCC GTGGGAAACC GCCCTGCGCG AACGCCGCGC CGTGGTGACG
AACGCGCCGC ACGATGCGGC GGCTGGGCGC GCACCGGGCG GCGCGACGGC CCGCTGGGCT
TGCGTGCCCG TGGTGGAAGG CGGCAGGCCG CGCCTGCTGC TGGGCGTGGC CGGCAAAGCG
CGGGACTATC ACCCACGCGA CGCACAGGCG CTGCAGACCG TGGCCGACGC CCTCTGGAAG
CACACGGCCC AGCGCCGCCA GGAGGCCGTC ATCCACCGCC TGTCGGAGGC GCTGGACCAG
AGCCCCAGTC CGGTGGTCAT CACCGACATC GACGCCAGCA TCGTCTACGT CAACAAGGCC
TTCAGCGAAG TCAGCGGCTA CGGCGCACAA GAGGTGCTGG GCCGCAACCC GCGCGTGCTG
CAGTCGGGAC TGACGCCGCG GACCACCTAT GCCGATATGT GGACCAAGCT GCCGCGCGGC
CTGCCCTGGC AGGGGGAACT CATCAACCGC CGCAAGAACG GACAGGTCTA CACGGAAAAC
GCCTCGCTTT ACCCCGTTCG CGACGTGTTC GGCGAAGTGA CGCATTACGT CGCGCACATG
GAGGACATCA CGCAGCGGCG CGAGGCGGAG GAGCGCATCC GCGCCCTCTC CAACTACGAC
ACGCTGACCG GCCTGCTCAA CAAGAAAGCC TTCGACGAAC AGTTGACGCA AGCCATCGAC
CGCGCCGACG CAAGCCACGA ACGGGTGTCG GTGCTGTGGT TCGACCTGGA CAACTTCAAG
CTGGTGAACG AAACCCTGGG CCACGCGGCC GGTGACGAGT TGCTGTTGGA GATGGGCAAC
CGGCTGCGCG CCTGCCTGGC GCCGCACATT CCCGTGGCGC GCTATTCGGG CGACGCGTTC
ACGGCCATCG TGCCCCTGGC GGACCAGGCG GCGGTGGCGC TGCTGGCGCA GGATGCGCTG
GCGCAGCTGC AGACCACACT GCAGATCCAC GGCCATGCCG TATCCGTCAG CGCGTCGGCC
GGCATCGCCG TCTACCCCGA CGACGCGCGC ACCGCCAGCA CCTTGGCGTC CGCCGCGGAA
GTGGCGATGT ACCGCGTCAA GCAGGACGGG CGCAACGGGC TGCGCTTCTT CGCACCCGAG
ATGCAGGCGC ACACGCAACG TTCGCTGGAG CTGGCCGCCG GCCTCAAGGA CGCGGCGCAC
CGCGGCGAGC TGTTCCTGGT GTTCCAGCCC CAGCGCACGC TGGGCAGCGG CGCACTGGCG
GGCGCCGAGG CGCTGCTGCG CTGGCGGCAT CCGCGCTGGG GGCTGGTGTC TCCGGCCGAG
TTCATCCCGA TCGCCGAGCA AAGCGGCTCC ATCGTGGCCA TCGATTTCTG GGTGGTGGAG
CAGGTGGCGC AGCAGTTGCG CGCCTGGGAT GCCGCGGGCC TGCCGCCGCT GGTGGTGGCG
GTGAACGTAT CGGCTGCGCA GTTCGCGCGG CCGCACTTCG TCGAGGAGCT GGTGCGCATC
CTGCAGCGCA TGGACATTTC ACCCCAGCGC ATCGAGGTGG AGCTGACCGA GGCCGTCGCG
CTGAAAAACC CGGAACAGGC CGAGACCACC ATCCGCCGCC TGCATGAGGT GGGCTTTCGC
GTGGCGCTGG ACGACTTCGG CACAGGCTAT TCCTCCATGA GCTACCTCAA GCGCTACGCC
ATCGACAAAC TCAAGATCGA CCAGTCCTTC GTGCGCGAAC TCGCCCACCA GGCCAGCGAC
CAGGCCATCG TGACGGCCAT CATCAAGATG GCCCACAGCC TGCGCATGGC CACCATTGCC
GAAGGCGTGG AGACGGCCGA GCAGGCCGCG TTGCTGCAGG CCTGCGGCTG CGACGAAATG
CAAGGCTACT GGTACAGCCG GCCGCTGGAG CCCGCCGCGT TCGAGGCCTT TGTGCGCAAT
GCGCAGGCTG GCGTCGAGTT GGCCTGA
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| Protein sequence | MHPAHRQEFR QSLIWFAVLL VSLWMLKTLP APDAARGMAG YLPLHTAMEV VSIGVAAMVF
SISWATQKYR PNGRVLVLGL GLLGVAVLDL THSLSYAGMP DFVTPSDPEK AINFWLAARA
LAALALLWAA LWPHRWNEWL GRRSRYAGLL WVALLVGAVH YVLLGHPQWL PRTFTPEAGL
TPFKVRFEYA LATAYVLAGV GFLTQLRHAR EFGLSHLALA SFTMAMSEIF FTLYANVTDV
YNVAGHFYKI LAYGFLYRGL FVETVQIPYL DLRAAEARQR ATLNTLPDLL FEVDRKGVYL
AVHANETSKL LTPLPQLLGK TLDEALPPAA AAQCFEALAE AERTGMSRGQ RITLPLPLGE
RHFELSVSRK SAVAGQPDTF LMLSRDITPT VENEERIRSE AGLNAVLLDL QQHDIHQPEA
DLLRRGLAHA QTLTGSALAV LYFVHDDARG TSLAACLHEN APPDMPPWET ALRERRAVVT
NAPHDAAAGR APGGATARWA CVPVVEGGRP RLLLGVAGKA RDYHPRDAQA LQTVADALWK
HTAQRRQEAV IHRLSEALDQ SPSPVVITDI DASIVYVNKA FSEVSGYGAQ EVLGRNPRVL
QSGLTPRTTY ADMWTKLPRG LPWQGELINR RKNGQVYTEN ASLYPVRDVF GEVTHYVAHM
EDITQRREAE ERIRALSNYD TLTGLLNKKA FDEQLTQAID RADASHERVS VLWFDLDNFK
LVNETLGHAA GDELLLEMGN RLRACLAPHI PVARYSGDAF TAIVPLADQA AVALLAQDAL
AQLQTTLQIH GHAVSVSASA GIAVYPDDAR TASTLASAAE VAMYRVKQDG RNGLRFFAPE
MQAHTQRSLE LAAGLKDAAH RGELFLVFQP QRTLGSGALA GAEALLRWRH PRWGLVSPAE
FIPIAEQSGS IVAIDFWVVE QVAQQLRAWD AAGLPPLVVA VNVSAAQFAR PHFVEELVRI
LQRMDISPQR IEVELTEAVA LKNPEQAETT IRRLHEVGFR VALDDFGTGY SSMSYLKRYA
IDKLKIDQSF VRELAHQASD QAIVTAIIKM AHSLRMATIA EGVETAEQAA LLQACGCDEM
QGYWYSRPLE PAAFEAFVRN AQAGVELA
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