| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Afer_1816 |
|---|
| Symbol | |
|---|
| ID | 8323910 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidimicrobium ferrooxidans DSM 10331 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013124 |
|---|
| Strand | - |
|---|
| Start bp | 1901140 |
|---|
| End bp | 1902603 |
|---|
| Gene Length | 1464 bp |
|---|
| Protein Length | 487 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644952947 |
|---|
| Product | UDP-N-acetylmuramyl-tripeptide synthetase |
|---|
| Protein accession | YP_003110403 |
|---|
| Protein GI | 256372579 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0769] UDP-N-acetylmuramyl tripeptide synthase |
|---|
| TIGRFAM ID | [TIGR01085] UDP-N-acetylmuramyl-tripeptide synthetase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.114829 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCTGACGC TGCGTGATCT GCATGGACTC GTGCCAAGCG CTCGTCTGGT GGGCGACCCC
TCGGTGGCGA TCGCCGACAT CACGCTGGAT TCACGGTCGG TCTCGCCTGG AGCGATGTTC
TGTGCGACGC GGGGATCGCG TTTCGATGGT CATGACTTCG TCAGCGATGC GATCGCGCGT
GGCGCCGTCG CGCTGCTCGT GCAGCACGAG GTGGCACTCG ACATCCCGCA ACTCGTGGTT
CCGTCGGTGC GGCACGCGAT CGGCGGGCTC GTCGCGGGGT TCTTCGGCCG TCCATCGGAG
CGGCTCGATC TCGTCGGCAT CACCGGCACC AATGGCAAGA CGACGACCTC GTACTTCATC
GACTCCATCT TGAGCCTTGC CGGCCGCCGA ACTGGACTCA TCGGCACCAT CGAGGCGCGC
TTCGGGGACT CCAACCGTCC GTCGATGTTC ACCACGCCCG AGGCGCCCGA GCTGCATCGC
TTGCTCCGGC AGATGGTCGA CGACGGAGTC GACTCCGTCG TGATGGAGGT GTCGTCGCAC
GGAATCGACC AGCACCGTAT CGACGGCACG AGCTTTCGAA TCGGGGTCTT CACCAACCTC
TCGCCCGAGC ACCTTGACTA TCACGGCACC ATCGAGCAGT ACTACGCGGC CAAGGCCCAG
CTCTTCCTAC CCGAGCGAAC CAAGCAGGCG GTGATCGGCA CCGACACCGA GTGGGGCGTG
CGGCTCGCGA CCCAGGTTCG CATCCCTGCG GTGACCTACG GGCCAGCCCC GTTTTCGGAC
TATCGCGTCG AGGACGTGCG CTACGACGAG TACGGGACGA TCTTCACCGT GGTCGTCGGC
GGCCGGCGTC GCTGGCGTCT GCGTGTGCCC ATCTACGGCA TTCACAACGC CTACAACGCG
GCAGCGGCGG TGGCGGTCGC AGAAGCGCTC GGGATCGAGG GCGACACGAT CGAGCGGGGG
CTGGCCGAGT GTCATCAGGT CGCGGGGCGC TTCCAGCGGA TCGACGCGGG ACAACCGTTC
ACGGTCGTGG TCGACTACGC GCACACGCCG GATTCGCTGC GAGCGCTCAT TGCGACCGCA
CGAGCGCTCT CCCCGAAGGG ACGAGTGATT CTGGTTGCGG GGGCTCGGGG CCGACGTGAC
CGCCTGAAGC GTCCCGAGCT GGGACGGGCC GCAGCGACCG CCGACGTCGC CATCTTGACG
GCCGACAATC CTGGCGACGA AGACCCAGGT GAGATCGTGG CGCAGCTGCT CGCAGGCACG
CTCGACGTGG ACCACAAGCA GATCATCGTG GAACTCGATC GGCGTGGAGC GATCGGCCAC
GCGATCGAGA TCGCCGAGGA GTCCGACGTC GTGCTCATCG TGGGGCGCGG CCACGAGCAG
ACCTTCCGGG TGGGCCAGAC GGTCTACCGG TTGGACGATC GCGAGGCCGC ACGTGAGGCG
ATCCTCGCGA AGCTGGCTCG GTAG
|
|---|
| Protein sequence | MLTLRDLHGL VPSARLVGDP SVAIADITLD SRSVSPGAMF CATRGSRFDG HDFVSDAIAR
GAVALLVQHE VALDIPQLVV PSVRHAIGGL VAGFFGRPSE RLDLVGITGT NGKTTTSYFI
DSILSLAGRR TGLIGTIEAR FGDSNRPSMF TTPEAPELHR LLRQMVDDGV DSVVMEVSSH
GIDQHRIDGT SFRIGVFTNL SPEHLDYHGT IEQYYAAKAQ LFLPERTKQA VIGTDTEWGV
RLATQVRIPA VTYGPAPFSD YRVEDVRYDE YGTIFTVVVG GRRRWRLRVP IYGIHNAYNA
AAAVAVAEAL GIEGDTIERG LAECHQVAGR FQRIDAGQPF TVVVDYAHTP DSLRALIATA
RALSPKGRVI LVAGARGRRD RLKRPELGRA AATADVAILT ADNPGDEDPG EIVAQLLAGT
LDVDHKQIIV ELDRRGAIGH AIEIAEESDV VLIVGRGHEQ TFRVGQTVYR LDDREAAREA
ILAKLAR
|
|---|
| |