| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Afer_1328 |
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| Symbol | |
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| ID | 8323407 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidimicrobium ferrooxidans DSM 10331 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013124 |
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| Strand | - |
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| Start bp | 1381772 |
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| End bp | 1383412 |
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| Gene Length | 1641 bp |
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| Protein Length | 546 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644952458 |
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| Product | alpha amylase catalytic region |
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| Protein accession | YP_003109927 |
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| Protein GI | 256372103 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0366] Glycosidases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGACTCGG TGGACGAACT TGGTGCGACG CTCGCGGCAG CGCGGGCCGG AGGACGCTGG
TGGGCCGGGG GCCTGCTCTA TCAGGTGTAC GTGTGGTCGT TTGCCGACAG CGACGGCGAC
GGTCTCGGAG ACCTCGGCGG TCTACGCCAG CGACTCGACT ACCTCCGGAC GCTCGGGGTC
GATGCGATCT GGCTGTCACC GATCATGCCG AGCCCACGGA CCGACTGGGG CTACGACGTC
GCCGACTACG ACGTGGTCGA CCCGGCACTC GGCGGTGAGG CGGCCTTTCG GGGACTCATG
GCCGATGCCG AGGCAGGAGG TCTGCGGGTG CTCATCGATC TCGTGCCGAA CCACACCAGC
GATCAGCATC CGTGGTTCCA AGAGGCGCTT GCTGATCCGT CGAGCCCGAG ACGTGCGTGG
TACGTGTTCG CCGAGCCGCG CGCCGATGGT GGGCCGCCGA ACAACTGGGT CGATGCCACA
GGGTCGTCCG CGTGGACGCT CGATCCCGCC TCTGGCCAGT ACTACCTCCA CAACTTCCTC
CCGACCCAGC CCGATCTCAA CTGGTGGAAC CCCGAGGTAC GCGCCGCCTT CGAAGCGATC
CTCGAGGAGT GGCTGGAGCG AGGCGTCGGC GGGTTTCGCA TCGACGTGGC GCACGGGCTC
GTGAAGGACG CCTTGGGGCG CGACGATCCT CCGGCCCCTC CCGGCACGCA TCCGTGGATC
GCCTGGGCAG GGAAGCTGAA GCGCTACTCG GCCAATCGCC CGGAGGTGCA CGAGATCTAC
CGTCGGTGGC ATGAGCTGGT GGCCAAGTGG GAACCGGCCC GCGTGTTGCT CGGCGAAACC
TGGGTCCTCG ATCCCATCGA ACTCGCTCGC TACTACGGCT CGGCGGAGGC GCCCGAACTC
GATCTGTGCC TGAACGTGGG GTTCATGGCG TCCGAGCCAG ATGCATCTTC GCTGCGTCGG
GTGATCGAGA CGACGATCGC CGCGCTGCCG GTGGGAGCGA TCCCGCTCTG GACGGGTTCG
AATCACGACG TCTCCAGGCT CGCAACCCGC TGGGCTCATG GCGACCGAGA GCGAGCGCTC
GCGCTGGTCG CCCTGATCCT CCTCCTGCCG GGCGCGGCGT TGCTCTACGC CGGTGACGAA
CTTGGCATGC GCGATGGCTC GGTGCCGCCC GAGCGCGTCC GCGACCCCAT GGGCCAGCAT
GCCGATGGTG GCAACGTCTC GCGCGACCCT TGCCGCACCC CTATCCGATG GCAACCAGGA
CCTGGCGCCG GGTTCACGGC GCCCTCGGTC GAGCCGTGGC TGCCCTTCGG TGACGATCCG
AGCGTCGAGG AGCAGCTCGC CGATCCGACC TCGGTGCTTG CGCGCACGAA GGCGATCATC
GCGTCGCGGC GTGCACGTGA GGACCTCGTC GTTGGCGGGA TTCGTTTCCT CGATGCGCCC
GAGGGTGTCC TTCGCTTTCG ACGAGGAACG CAGACGGAGG TCTACGTCAA CCTTGCCGAC
GGCGACCGGA CCGTCGACGT GGATGGCGGG CGTGTGCTCG TTGGAACTCG GCGACGCGGG
AGCGAGCGCG TGGGGGGCAC GCTCCAGCTC GCCTCGAGCG AGGTGGTTGT GGTCGATCTG
GACGAGTCGT CCGCGTCGTA G
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| Protein sequence | MDSVDELGAT LAAARAGGRW WAGGLLYQVY VWSFADSDGD GLGDLGGLRQ RLDYLRTLGV
DAIWLSPIMP SPRTDWGYDV ADYDVVDPAL GGEAAFRGLM ADAEAGGLRV LIDLVPNHTS
DQHPWFQEAL ADPSSPRRAW YVFAEPRADG GPPNNWVDAT GSSAWTLDPA SGQYYLHNFL
PTQPDLNWWN PEVRAAFEAI LEEWLERGVG GFRIDVAHGL VKDALGRDDP PAPPGTHPWI
AWAGKLKRYS ANRPEVHEIY RRWHELVAKW EPARVLLGET WVLDPIELAR YYGSAEAPEL
DLCLNVGFMA SEPDASSLRR VIETTIAALP VGAIPLWTGS NHDVSRLATR WAHGDRERAL
ALVALILLLP GAALLYAGDE LGMRDGSVPP ERVRDPMGQH ADGGNVSRDP CRTPIRWQPG
PGAGFTAPSV EPWLPFGDDP SVEEQLADPT SVLARTKAII ASRRAREDLV VGGIRFLDAP
EGVLRFRRGT QTEVYVNLAD GDRTVDVDGG RVLVGTRRRG SERVGGTLQL ASSEVVVVDL
DESSAS
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