Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Afer_1161 |
Symbol | |
ID | 8323232 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidimicrobium ferrooxidans DSM 10331 |
Kingdom | Bacteria |
Replicon accession | NC_013124 |
Strand | - |
Start bp | 1211108 |
End bp | 1212397 |
Gene Length | 1290 bp |
Protein Length | 429 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 644952290 |
Product | geranylgeranyl reductase |
Protein accession | YP_003109767 |
Protein GI | 256371943 |
COG category | [C] Energy production and conversion |
COG ID | [COG0644] Dehydrogenases (flavoproteins) |
TIGRFAM ID | [TIGR02032] geranylgeranyl reductase family |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTCCTC TCCCGTCGTG CGTCGTCGTC GGTGCCGGTC CTGCGGGGTC GATCGCCGCG CGACAGCTCG CGCTCGCCGG CTGGCGTGTG ACGCTCGTGG ATCGCAGCAC CTTCCCTCGT GACAAGGCAT GTGGTGACGT GGTCGGTCCT CAGGCGCTCG CGACCTTGGC CGCCGTAGGG CTCACGCCAG AGCCCGAGTG GCCCCGGATC GGCGACCTGG ACGTCTGGGT CGAGGGTGCG CGCCTGCACT TGCCGGCATC CCCAGGTCTC GCGCACCCCG GCGAGGGTCG GATGGTGACG AGGCGGCTCT TCGATGCATG GCTGCGGGAC GCGGCCGTCG CGGCAGGGGC CCGTGCCATC GTCGGCCGGG TTCGTGGTCT CGTCCAAGGA GCTGACGGTG TGCGGGTCCA CCTCGACGAC GGCGTGCTCG ACGCCGACGC CGTCGTCGGT GCCGACGGGG CGCTGTCGAC AGTCGCGCGG TCGGTGGGGG CGGCGTCACC GACACGGGCG CTGTGGGGCT TTGCACTGCG TCGCTACGTT GCGTCGTCGA CGCTCGATGC CGACCGAGTC GACCTGCTTG CGCAGGCGAG TGGGTTCGCG AGCTACGGAT GGGCCTTTCG AGGTGCCGAT GGCATCGCGA ACGTAGGCGT GGGCATCGCG GTTGGGGGAG AGCGAGCACG CCTGCGAGGG CTGCGCCCCT TGCTCGATGA CTACCTCGGT CGGATCGGAC TCGTCGATGT GGCCGACGCT CCTGTGCTCG GTGGCTGGTT GCGGATGGGT GGGATCGGGG TGGCGCCGTG GCGCGGTCGT GTGCTCTTGG TGGGTGACGC CGCGGGTTTC GTGAACCCAC TCCAAGGCGA AGGGATCTGG GCGGCGCTCG CTTCTGGGGC CCAGGCAGCC GCGGCTCTCG GTGCAAGGGG ACCGCTGGGA GGAGGACCGG CCTACGGTCG TTGGGCCGAG GCCCAGATGG CGCCGTTCCT CGCTGGCGCA GCACTCCTCC ATCGAGCTGC CCTCTGGAAT CCTCGGCTCG CAGATCGGGC GGTCGCGGCT GGTGCCAGGG TGCTCGCGCA CCGGCCTTCA CTGGCAGCTG GGGTCGGAGC CTGGTTGAAC GGGCTGGTCG CGCTCGATGG TCCGGGTCAT GGGTCTGGGT GGATGCTCGA TCGAGCGACG GTGATGGCTG CGCGGGCGAG CGGCTTGCTC GGGGGCTACG AGCTCGGTGC CTCACTCGGC CAGGTGCCGT CGATGCTCGC GAGGCCGTCG AGGCTCCAGC GATTGTGGCG GGCGACGTAG
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Protein sequence | MSPLPSCVVV GAGPAGSIAA RQLALAGWRV TLVDRSTFPR DKACGDVVGP QALATLAAVG LTPEPEWPRI GDLDVWVEGA RLHLPASPGL AHPGEGRMVT RRLFDAWLRD AAVAAGARAI VGRVRGLVQG ADGVRVHLDD GVLDADAVVG ADGALSTVAR SVGAASPTRA LWGFALRRYV ASSTLDADRV DLLAQASGFA SYGWAFRGAD GIANVGVGIA VGGERARLRG LRPLLDDYLG RIGLVDVADA PVLGGWLRMG GIGVAPWRGR VLLVGDAAGF VNPLQGEGIW AALASGAQAA AALGARGPLG GGPAYGRWAE AQMAPFLAGA ALLHRAALWN PRLADRAVAA GARVLAHRPS LAAGVGAWLN GLVALDGPGH GSGWMLDRAT VMAARASGLL GGYELGASLG QVPSMLARPS RLQRLWRAT
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