| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Afer_1133 |
|---|
| Symbol | |
|---|
| ID | 8323203 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidimicrobium ferrooxidans DSM 10331 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013124 |
|---|
| Strand | - |
|---|
| Start bp | 1178033 |
|---|
| End bp | 1178932 |
|---|
| Gene Length | 900 bp |
|---|
| Protein Length | 299 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 644952261 |
|---|
| Product | integrase family protein |
|---|
| Protein accession | YP_003109739 |
|---|
| Protein GI | 256371915 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4974] Site-specific recombinase XerD |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGGACCCGG CGAGTGAGGC GGTCGTCGAC GAGTACCTCA CCCTCCTCGT CGTTGCGGCC
GATCGGTCCG AGTTGACCGC CATCGCGTAT CGCAGCGATC TCGAAGCGGT CGCGACCTGG
CTGGAGGCGA GAGGGTCGCG CCTCCTCGAT GCGAGCCCGG CTCTGTTGCG CTCCTGGGTG
GACGCCGCCG GCCGGGAGCG CTCCCCGCGC GGCGTTCAGC GCGCCGCGAG TGCGCTACGG
GGACTGTTCC GTTACGCCCA ACGCGTCGGT GCGAGAGCGG ACGATCCGAT GGAGGGGATC
CATGCGCCTG GAACGGCGGT CGCGCTGCCA CGTGCGCTCG CTCGCGACGA GGTCGAGCGG
CTCATCGAGT CCGTCGGGAC CGCAGATGTC GCCGGCGCTC GTGACCGTGC GATCCTCGAG
GTGCTCTATG GATCGGGCGT TCGGGTGAGC GAGCTCTGTG GCTTCACGCT CGACACCATC
GCCCAGGGTC GATGGGTACC TGTAGTGGGC AAGCGAGGAC GCGAACGCCT CGTCCCGATC
TCGGCCCCTG CGCGCGATGC GCTCGAGCAG TGGGTGGTTC GATGGCGACC GCAGCTCGCT
CCCAAGCATC GGATGCTCTT CGTCAACCTC CGGGGCGCAC CCATCACGCG CCAGGGGGTC
TGGCTGGTGC TGAAGCAACG TGCGTCGCGG GTCGGTCTCG GCGATCGGGT CTCGCCCCAC
GTCCTGCGCC ATTCGCTCGC GGTCCACATG GTCGAGGCCG GGGCCGACCT GCGCGTGGTC
CAGGAGATCC TTGGTCACGC ATCCCTCGCC ACCACGGAGC TCTACACCAA GGTGTCGGAG
GGTCACGTGG ATGCCGTCTA CCAACGCGCG CATCCGCGTG CTCGGGCCGG GAGCCGCTGA
|
|---|
| Protein sequence | MDPASEAVVD EYLTLLVVAA DRSELTAIAY RSDLEAVATW LEARGSRLLD ASPALLRSWV
DAAGRERSPR GVQRAASALR GLFRYAQRVG ARADDPMEGI HAPGTAVALP RALARDEVER
LIESVGTADV AGARDRAILE VLYGSGVRVS ELCGFTLDTI AQGRWVPVVG KRGRERLVPI
SAPARDALEQ WVVRWRPQLA PKHRMLFVNL RGAPITRQGV WLVLKQRASR VGLGDRVSPH
VLRHSLAVHM VEAGADLRVV QEILGHASLA TTELYTKVSE GHVDAVYQRA HPRARAGSR
|
|---|
| |