Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Afer_1036 |
Symbol | |
ID | 8323100 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidimicrobium ferrooxidans DSM 10331 |
Kingdom | Bacteria |
Replicon accession | NC_013124 |
Strand | - |
Start bp | 1071821 |
End bp | 1073839 |
Gene Length | 2019 bp |
Protein Length | 672 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 644952163 |
Product | drug resistance transporter, EmrB/QacA subfamily |
Protein accession | YP_003109647 |
Protein GI | 256371823 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily [TIGR01297] cation diffusion facilitator family transporter |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCGACA CCACGCTCTC GCCGTCGTCG ACGGTACGCG CCCACGGCGC TCGCCTTGGG CTGATTCTCA CTGGCCTCTT GCTCGGGATG CTGGTGGCAG CCCTCGATCA GACCATCGTC GCCACCGCAC TCCCGACCAT CGCCAACGAC CTGCATGGCT TCAGCCACCT GAGCTGGGTG GTCACGGCAT ACCTCATCGC CTCGACCGCC TCGACGCCGC TGTGGGGCAA GCTCGGCGAC CTCTACGGAC GCAAGCGCTT CTTCCAGCTC GCGATCCTCA TCTTCCTCGT CGGTTCGGCG CTCTCCGGCC TGTCGCAGAA CATGCTGGAG CTGATTCTGT TCCGCGGTCT CCAGGGACTC GGTGGCGGTG GCCTCATCGT GGGCGCGCAA GCGATCATCG GCGACGTGGT GTCACCGCGC GATCGGGGCA AGTACCAGGG GCTCTTCGGC GCGATCTTCG GGGTCGCGAG CGTCGTCGGA CCGTTGCTCG GTGGCTTCTT CGTCGACTCG CTCTCGTGGC GCTGGGTGTT CTACATCAAC CTGCCCATCG GCATCATCGC GATCGCGGTG ATCTCGAGCG CCCTGCCCCA GCTCTCCACG CGCGTCCAGC ATCGCGTCGA CTACCTCGGC ACGCTGCTCG TGGCCCTCGC CGCGACCGGC TACATCCTCG TCACGACCCT CGGTGGGTTG ACGTACCCAT GGGGTTCGTG GCAGATCATC ACCCTCACGA TCGCATCCAC CGTCGCCCTG GTCGCCTTCG TCCTCGTCGA GCAGCGCGCC TCCGAGCCCA TCTTGCGCAT GGGCCTCTTC CGCAACCGCA CCTTCTCGAT GACGAGTGCG ATCGGGTTCG TGGTCGGCTT TGCGATGTTC GGCGCAATCA CCTTCCTCCC CACCTTCTTG CAGATCGTTC GCGGTGCCTC CCCCACGGTC AGCGGGATCC AGCTGCTGCC GCTCATGGCC GGCCTGCTCG TCATGAGCAT CGGGGCAGGC CTGCTCATCA GTCGATTCGG GCGCTACAAG GTCTTCCCGA TCGTCGGCAC GGCCCTCATG ACGGTCGGAC TGTGGCTGCT GAGCCGCCTC AGCGTGCACA CGTCCTACGG CGTCATCGCC TTCGACATGA TCGTGCTCGG GGTGGGGATC GGCGGCGTGA TGCAGGTGCT CGTCATCGCG GTGCAGAACG CGGTGGGCTA CGAAGACCTC GGCGTCGCAA CCTCTGGGGC GACGTTCTTC CGCTCCATCG GCGCCTCGTT CGGCGTGGCG ATCTTCGGCT CGATCTTCAC CAATGCGCTC GACTCCAAGC TCGCTGCCGT CGCCACCCGC TACCACCTCC CGGCCAACCT GGCGGTTCAG GCCGAGGAGA GCCCGAAGGC ACTCACCGCC ATCCCGGCCC AGATCCTGCC CCAGCTCCTG CACGCGTTCG CAAGCTCCCT GGACCGAGTC TTCCTCGTCG CAGCGCCGAT CGGCCTCTTG GCCTTCGTGC TCACGCTCTT CCTGCCCGAG CTGCGCCTGC GCCGCTCCGT CGCGGCCGCG GACCTCGGTG AGGGATTCGC CATGCCCGAA GCCGATCCCG CCAAGGACGC CATCAGCCGC GTCCTCGAAC GGCTCTCACG CGACGGCGGT GTCGAGCGGC TGTATCGACG ACTCGCACAA GACGCCGGAC TCGGCACGAC TCCGGCGGCG ACCTGGCTGC TCTTCCGGGC GCGCGATGGG CGGCTGCCAC AGAGCACGCT CACGATGGCG ACGCGAGCCG GCTGGGATCT GTCCGACGCG CTCGCTCGAC TCCGCGACGC TGGCCTCGTG CGCACCGACG CGGACGTCAT CGAGCTCACC GAGGCGGGGC GAACCGCTCG GGCCGCACTC GACGATGCGC GCCGTGCGGT CATCGCGGAG ACGCTCGGTG AGGGCGCAAC CTCCGAGACC GCGGCAAGCC TCGTCGAGGC CATCGCGGAC ACGCTCGGGG TCCTCGATCC CGACGACGAT CTCTTCTCCG AGGCTCGCGG GTCCGCTCGC TCCGCCTGA
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Protein sequence | MTDTTLSPSS TVRAHGARLG LILTGLLLGM LVAALDQTIV ATALPTIAND LHGFSHLSWV VTAYLIASTA STPLWGKLGD LYGRKRFFQL AILIFLVGSA LSGLSQNMLE LILFRGLQGL GGGGLIVGAQ AIIGDVVSPR DRGKYQGLFG AIFGVASVVG PLLGGFFVDS LSWRWVFYIN LPIGIIAIAV ISSALPQLST RVQHRVDYLG TLLVALAATG YILVTTLGGL TYPWGSWQII TLTIASTVAL VAFVLVEQRA SEPILRMGLF RNRTFSMTSA IGFVVGFAMF GAITFLPTFL QIVRGASPTV SGIQLLPLMA GLLVMSIGAG LLISRFGRYK VFPIVGTALM TVGLWLLSRL SVHTSYGVIA FDMIVLGVGI GGVMQVLVIA VQNAVGYEDL GVATSGATFF RSIGASFGVA IFGSIFTNAL DSKLAAVATR YHLPANLAVQ AEESPKALTA IPAQILPQLL HAFASSLDRV FLVAAPIGLL AFVLTLFLPE LRLRRSVAAA DLGEGFAMPE ADPAKDAISR VLERLSRDGG VERLYRRLAQ DAGLGTTPAA TWLLFRARDG RLPQSTLTMA TRAGWDLSDA LARLRDAGLV RTDADVIELT EAGRTARAAL DDARRAVIAE TLGEGATSET AASLVEAIAD TLGVLDPDDD LFSEARGSAR SA
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