Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Afer_0900 |
Symbol | |
ID | 8322964 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidimicrobium ferrooxidans DSM 10331 |
Kingdom | Bacteria |
Replicon accession | NC_013124 |
Strand | - |
Start bp | 921821 |
End bp | 924094 |
Gene Length | 2274 bp |
Protein Length | 757 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 644952034 |
Product | Radical SAM domain protein |
Protein accession | YP_003109518 |
Protein GI | 256371694 |
COG category | [H] Coenzyme transport and metabolism [R] General function prediction only |
COG ID | [COG1060] Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes |
TIGRFAM ID | [TIGR00423] radical SAM domain protein, CofH subfamily [TIGR03550] 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit [TIGR03551] 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.180074 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCAAGG CGCTGCTCGA GTGGTCCACC AACCGACTGC TCGCCGAAGC TGCTCGTCGG CGCGATCGAA CCTTCGGGCC GAGGATCACC TACTCCCCGA AGGTGTTCAT CCCGTTGACG CGTCTGTGCC GCGATCGCTG CGACTACTGC ACCTTCGCCA CCGTGCCCGC CCGACTCGGA TCTGCCTTCC TGAGCCTCGA CGAGGTCCGC GCGTTGGCTC GCAAGGGGGC GGCGGTGGGC GCTGCGGAGG CGCTCTTCAC CCTTGGCGAG CGCCCTGAGC TCCGATGGTC CAGCGCACGC GATGCACTGC GTTCGCTGGG CGCTGCAACC ACCCTGGACT ACCTCCGCAC CGCGGCTGAC GTCGCGATCG CCGAGGGACT CCTCCCTCAC CTCAATCCCG GGACGCTCAC GCCCGAAGAG GTCGCGTCGC TACGACCGCA CGCCGTCTCG ATGGGCACGA TGCTCGAGTC CATCCGACCG GACCTCCCGG TCCACCGCAA CGCACCCGAC AAGGATCCGG ATCTGCGCCT CGCAACGGTA CGTGCGATGG CACTCCAGCA CGTGCCGACG ACCAGCGGCA TCCTCGTGGG CATCGGTGAC AGCGAAGCCG ATCGCCTCCG TGCACTCGAA GCCCTCGCCG CCATCGCCGA GGAGACCGGC TTCCTCCAAG AGGTGATCGT CCAGAACTTC CTCCCAAAAC CTGGTACTCG ACTGCGGCAC GCCCCGCCCG CCGATCACGA GGCCCATCTG CGTACCATCG CACTCGCGCG TCTCGTGCTC CCACCGACCG TCCATGTTCA GGCACCCCCG AACCTCTCGG ACGACATCGA GGGGCTCCTC TCGGCGGGCA TCGACGATCT CGGCGGCATC TCGCGGGTCA CCCCCGATCA CGTCAACCCC GAACGCCCGT GGCCCGAGAT CGAGCTCCTC GAGCGTCGCC TCGCCGAGGC AGGCCGCGAC CTCGTGCCGC GCCTCGCGCT CTACCCCGAG TACGCGCGAC GTGACGACGC CGTCGACGAC GCGCTCCGAC CCGCAGTGCG CGCGTCCATG GATCGCGATG GCTTCGCACG CGAGCACCAG TGGTTCTCCG GTCGACCAGG TCCCCTCCCC CCGCGCGTGG TGACCGTCAG CCGACGAGCT CCGGCCGGTT GGTTCGACGA GCTCGAAGCG GCGTCACGAT CGGGAGAGGG TCCCTCGCTC GAGCTGCTCG AGCACGCCCT CAGTGCGCGC GGAACCGACG CACAGGCGGT CATCGACCTC GCCGATGCGC TGCGGCGCGA GACGAACGGC GACGTCGTCA CCTTCGTTCA GAACCGGAAC ATCAACTACA CCAACCAGTG CACCTTCGGC TGCGGGTTCT GCGCCTTCTC GCGCGGCCCG CGCTCCTTGG CGCTCCGTGG CGCACCCTAT CTCCTGTCGA TGGAGCAGAT CCTCGCCAAG GTTGCCGAGG CAGCCGCCCG TGGTGCGACC GAGGTCTGCC TCCAGGGCGG TATCCATCCT CGCTTCGACG GCGGCACGTA CCTCGACATC GCCGAAGCCA TCCACGAACG CTTCCCGGCC ATGCACATCC ACGCGTTCTC GGCACTCGAG GTCTTCGAGG GGAGCCGACG ACTCGGCTGG CCCCTCGACC GTTACCTCAG CGAGCTCGCC GCCCGCGGTG TGCGAAGCCT GCCCGGAACG GCCGCCGAGA TCCTCGATGA CGAGGTACGT GCGGTGATCT GCCCCGAGAA GCTGACCACC GACCAGTGGC TCGAGGTCCA CGAGACCGCA CACGCGGTCG GCTTGCGATC GAACGTGACG ATCATGTTCG GGACGGTCGA GACGACCACG CACACCGCAC GGCACCTCAT GCGCACCCGG GCGCTCGGTA CGCGCACACG AGGGTTTACC GAGTTCGTGC CTCTCCCCTT CGTCCACATG GGCGCACCGA TCTTCCTCGC TGGCCGTGCC CGCCGGGGTC CGACGCTCCG AGAGGCCGTC CTCCTCCACG CGGTGGGGCG CATCGCCTAC CACGGTGTTA TCGACAACGT CCAGGCCAGC TGGGTGAAGA TGGGGCCTGC CGGAGCCGTG CTCCTCCTCG ACGCCGGCGC GAACGACCTC GGCGGGACGC TCATGGAGGA GTCGATTTCG CACGCAGCCG GGGCGGCACA CGCGAGCGAG CTCACCGTCG CCGAGCTTGG TGCGATCGCA GCGCAGCGAG GCCGCCACCT CGTCCAACGA ACGACGTTCT ACGAGCACCT GATGGACGTC ACGATCGCGA GCACGCACTC ATGA
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Protein sequence | MTKALLEWST NRLLAEAARR RDRTFGPRIT YSPKVFIPLT RLCRDRCDYC TFATVPARLG SAFLSLDEVR ALARKGAAVG AAEALFTLGE RPELRWSSAR DALRSLGAAT TLDYLRTAAD VAIAEGLLPH LNPGTLTPEE VASLRPHAVS MGTMLESIRP DLPVHRNAPD KDPDLRLATV RAMALQHVPT TSGILVGIGD SEADRLRALE ALAAIAEETG FLQEVIVQNF LPKPGTRLRH APPADHEAHL RTIALARLVL PPTVHVQAPP NLSDDIEGLL SAGIDDLGGI SRVTPDHVNP ERPWPEIELL ERRLAEAGRD LVPRLALYPE YARRDDAVDD ALRPAVRASM DRDGFAREHQ WFSGRPGPLP PRVVTVSRRA PAGWFDELEA ASRSGEGPSL ELLEHALSAR GTDAQAVIDL ADALRRETNG DVVTFVQNRN INYTNQCTFG CGFCAFSRGP RSLALRGAPY LLSMEQILAK VAEAAARGAT EVCLQGGIHP RFDGGTYLDI AEAIHERFPA MHIHAFSALE VFEGSRRLGW PLDRYLSELA ARGVRSLPGT AAEILDDEVR AVICPEKLTT DQWLEVHETA HAVGLRSNVT IMFGTVETTT HTARHLMRTR ALGTRTRGFT EFVPLPFVHM GAPIFLAGRA RRGPTLREAV LLHAVGRIAY HGVIDNVQAS WVKMGPAGAV LLLDAGANDL GGTLMEESIS HAAGAAHASE LTVAELGAIA AQRGRHLVQR TTFYEHLMDV TIASTHS
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