| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Afer_0875 |
|---|
| Symbol | |
|---|
| ID | 8322939 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidimicrobium ferrooxidans DSM 10331 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013124 |
|---|
| Strand | + |
|---|
| Start bp | 896232 |
|---|
| End bp | 897119 |
|---|
| Gene Length | 888 bp |
|---|
| Protein Length | 295 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 644952009 |
|---|
| Product | MIP family channel protein |
|---|
| Protein accession | YP_003109493 |
|---|
| Protein GI | 256371669 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0580] Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) |
|---|
| TIGRFAM ID | [TIGR00861] MIP family channel proteins |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGCCACAA CACAGGCGCG ACCGGCCGGC AAGACCGGCT GGCGCGCAAC GACATGGGGA
GAGCTGCTCT CCGAATATCT CGGTACGTTG GTGCTGCTCG CCTTCGGGAC GGGCTCGGTC
GCGGTTGCAG TGGTGGGCCT CACCATGTCC GGCCGCACCG TCGTCATCTT CCAGGGAGCG
GGCGGCTGGC TGCTGATCAC CTGGGGCTGG GCCATGGCGG TCGTGATGGG CGTCTACGTG
GCTGGCGGGG TGTCCGGCGC ACACCTGAAC CCGGCGGTGA CGCTGGCCAT GGCGATCAAG
GGCTCGCTGC CGTGGCGTAA GGTGCCGGGC TACTGGATCG CCCAGGTTCT CGGGGCATTC
TCTGGCGCGG CGATCGTCTA CCTGGACTAC TACAAGGCGA TCGATGCGTG GAACCTTGCG
CACCACGTCA CGCGCGCCAG CGCCGGTGGG TTGACGACCT TCTCGATCTT TGCCACGTTC
CCCGCGAAGT ACTTCGGCAC GAGCCTCGTC GGGCCATTCA TCGACCAGGT GATCGGCACG
TTCTTCCTGC TGCTGTTCGT GCTCGCCATC ACCGACGCGA CGAACTCGGG GCCGGGTTCG
AACATGGCAC CGTTCCTCGT CGGGATGGCC GTCGCGGCGA TCGGCATGAG CTTTGGTACG
GACGCCGGTT ACGCGATCAA CCCTGCGCGT GACTTCGGTC CGCGGCTCCT GACGTGGTTC
CTCGGCTGGG GACACAACGC CTTCGCCGGT CTCAACGGTT ACTGGTGGGT CCCGATCGTC
GGTCCGCTCG TCGGTGGAGC GATCGCGGTT GGGGTCTATC GCTGGTTCAT CGAGGACACG
ATTCGTGCGC GCTTCGCGCG CCAGAGCACG GAAGGAGGGG CGCAGTGA
|
|---|
| Protein sequence | MATTQARPAG KTGWRATTWG ELLSEYLGTL VLLAFGTGSV AVAVVGLTMS GRTVVIFQGA
GGWLLITWGW AMAVVMGVYV AGGVSGAHLN PAVTLAMAIK GSLPWRKVPG YWIAQVLGAF
SGAAIVYLDY YKAIDAWNLA HHVTRASAGG LTTFSIFATF PAKYFGTSLV GPFIDQVIGT
FFLLLFVLAI TDATNSGPGS NMAPFLVGMA VAAIGMSFGT DAGYAINPAR DFGPRLLTWF
LGWGHNAFAG LNGYWWVPIV GPLVGGAIAV GVYRWFIEDT IRARFARQST EGGAQ
|
|---|
| |