| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Afer_0723 |
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| Symbol | |
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| ID | 8322783 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidimicrobium ferrooxidans DSM 10331 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013124 |
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| Strand | + |
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| Start bp | 729699 |
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| End bp | 733154 |
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| Gene Length | 3456 bp |
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| Protein Length | 1151 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644951858 |
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| Product | methionine synthase |
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| Protein accession | YP_003109346 |
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| Protein GI | 256371522 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1410] Methionine synthase I, cobalamin-binding domain |
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| TIGRFAM ID | [TIGR00640] methylmalonyl-CoA mutase C-terminal domain
[TIGR02082] 5-methyltetrahydrofolate--homocysteine methyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.830371 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAGGACCT ACGAGGAGCT GCTGCGTGAG CGTGTCGTCG TGTTCGACGG CGCGATGGGC
ACCAACCTGC AGCTGGCCGG CCTCGGCGCC GACGACTTTG GGGGTCCCGC GCTCGAGGGT
TGCAACGAGA TCCTCGTCGT GACGAGGCCC GAGGCGGTGG CCGCGGTGCA CGACTCGTTC
CTCGCCGTCG GTGTCGACGT CGTCGAGACC GACACGTTCG GCGCCTTGGC GCCGGTCCTG
GCCGAGTACG GTATCGCCGA GCGTGCCTAC GAGCTCAACC TTCGAGCGGC CCAGCTCGCT
CGAGACGTCG CCTCTGGCTA TGCGACGCCC GATCATCCTC GCTTCGTGGC GGGCTCGATG
GGGCCGGGGA CGAAGCTGCC CTCGCTCGGC CAGATCCCCT TCGAGGACCT GCGAGACGCC
TACGAGGTGC AGGCCGAGGG CCTGATCGCG GGAGGTGTCG ATCTCCTGCT CGTGGAGACG
GTCTACGACC TGCTCTCTGC CAAGGCGGCG GTGATCGGCG CCCGTCGAGC CATGCGCCGA
CTGGGCCGCT CGGTCCCGGT CCAGGTGCAG GTGACGATCG AGACCACCGG TCGGATGCTG
CCTGGCACGG AGGTTGGTGC GGCACTCGCC GCGCTGGAGC GTCTCGACCC GGTCGCGATC
GGCATCAACT GCGCGACCGG TCCCGAGGAG ATGGGCGAGC ACCTTCGGTA TCTCTCGGAG
CATCAGCGCG TGCCGATCTC GTGCCTGCCG AACGCGGGCA TGCCCCACGT CGTCGACGGT
CACATGCACT ACGACCTGAC CCCGGACGCC CTGGCGGCGG CGCACCGTCG CTTCGTCGAC
GAACTCGGGG TCGGGATCGT CGGTGGCTGC TGTGGCACGC GGCCCGAGCA CCTGCGGGCC
GTCGTCGAGG CCGTCGGTGA GGCGGTCCCG AGAGAGCGCC ATCCGACGCC ACGGGCACAG
GTGGCGTCGC TCTACCAGGC GGTCGAGCTG CGACAAGACC TCGCCATCAC TGCGGTGGGT
GAGCGCACCA ACGCCAACGG CTCTCGCCGC TTCCGCGACG CCATGCTCGC TCGCGACTGG
GACACCTGTG TGCGCATGGC GCAGGATCAG GTTCGCGACG GCGCTCACAT GATCGACCTC
TGCGTCGACT ACACCGGCGA GGACGGCACC GTCGCCATGG AGGAGCTCTC GAGCCGCCTC
GCGACCGCGT CCACGTTGCC GATCATGATC GACTCGACCG AAGCGGCGGT GGTGGAGACC
GCGCTCCGGC ACCTCGGCGG CAGGCCGATC ATCAACTCGG TCAACCTCGA GGAGGGTGAG
GGGTCCAATA CCCGGTTCGA CTCCTTCTTG CGCCTCGCGA AGGACTACGG TGCGGCGGTG
GTTGCGACCT GCATCGACGA GGAAGGCCAG GCGCGTACCG CGGCGCGCAA GGTCGAGATC
GCCAAGCGGA TCGTTGCACT CGCGGTCGAA CGCTACGGCT TGGCCACCGA CGACATCATC
ATCGATCCAC TCGTCCTCCC GGTGACGACC GGGATGGAGG AGTCACGACG TGACGCGCTC
GAAACCATCG AGGCCCTGCG GCGCATCACC GCCGAGATGC CCGGCGTCTC GACGCTGGTC
GGGTTGTCGA ACGTCTCCTT CGGTATCAAT GCGGCTGCTC GTGAAGCGCT CAACAGCGTG
TTCCTCGCCG AATGCCAGGC AGCCGGCCTG AGTATGGCCA TCTTGCACCC CTCGCGGATC
CAGCCGCTCG CTCGCATCCC TGAGGATGTG CGCGCGATCT GCCTCGACCT CATCTACGAT
CGCCGCGGCC AGGGCGACCC GCTTGCCCGC CTGATCGAGC GCTTCGCGGA CGTCCAGGCG
GTCGCGGTCA CGGGCGAGGA GCTCGAGGCC CTCTCCGTGC CGGAACGGCT GCACCGGCGC
ATCGTCGACG CCAATCGTCA GGGCCTCGAG GATGACCTGG CCGCCGCGCT CGGCGAGGGC
ATGAGCGCGC TCGGCGTGAT CAACGACGTG CTGCTCCCGG CGATGGCCGA GGTCGGCGAC
CTGTTCGGGT CGGGCCAGAT GCAGCTTCCG TTCGTGCTCG CCTCGGCCGA GACGATGAAG
CAGGCGGTTG CATGGCTCGA GCCCTACCTC GATCGCGCAT CGGTGAACGA TCGAGGCACC
GTCGTGCTCG CGACCGTCCA AGGGGACGTG CACGACATCG GCAAGAACCT GGTCGACATC
ATTCTCACCA ACAACGGCTA TCGCGTGGTG AACCTCGGCA TCAAGGTCGC CTTGTCGGAG
ATGCTGGCGG CCGCCGAAGA GCACCATGCC GATGCGATCG GCATGAGCGG ACTGCTCGTC
AAGTCGACCC TCGTGATGCG CGACAACCTG GTCGAGATGA ACGAACGAGG AATGGCCCAC
CTGCCGGTCA TCCTCGGTGG CGCCGCGCTG ACCCGTACCT TCGTCGAGCG GGACCTGCGC
CAGGTGTACG ACGGTCGGGT CTTCTACGGC AAGGACGCGT TCGAGGGGCT CGATGTGCTC
GAGCGGTTGG GGCGCATCCG TCGTGGCGAG CTCGACGATC CCGAGTTCGG GCGTTCGATC
CGGCAGTCGA GCACGAGGAC GCCGCGGCTC CTGCGACGCT CGACGAGTGA GCGCACCGAG
CGATCGCCGA CGGTCGCGAT GGACAACCCG ATCTTCCGTC CACCGTTCCT CGGCACGAGA
GTCGTGAAGG GGATCGCGCT GGACGACATC GCGGCCTACG TGAACGAGAC CGCGCTGTTT
CGTCACCAGT GGGGGTATCG ACCCGAAGGC GATGAGGACG ACGCGGCCTT CAAGCAGCGC
TTGCGCGCGG AGCTGCGCCG TCAGCTCGAC CGTGCGCTCG TGGACCAGAG CCTGGTGCCC
CAGGTCGTCT ACGGCTACTT CGTCGCGGCT TCCGAGGGTA ACGACCTCGT GGTGTTCGCG
GACGAGGCGC GTGAGCACGA ACTCGCTCGA TTCCGTTTCC CTCGCCAAGA GCAGGAGCCG
TACCTCTGTA TCGCGGACTT CTTCCGGCCG CTCGCGGGGC CCGAGATCGA CTACGTCGCC
TTCCACGTGG TGACCATGGG TCCGCGGATC ACGGAGGTCG CCAAGCGGGC GTTCGACGAG
AATCGGTACC AGGAGTACCT CCTCCTCCAC GGGCTCGGAG TCGAGCTCAC CGAGGCGCTC
GCCGAGTACT GGCATGCCAG GATCCGAGCG GAGTGGGGCT TTGGCGACGA GGACGGCCCG
ACGCTCGCGG GGCTCTTTCG TCAGCAGTAC CGTGGGAGTC GCTACAGCTG GGGCTACCCA
GCCTGTCCGG ACCTCGAGGA CAACCGGACG GTCGTCGATC TGCTCGATGC CGGTCGTATC
GGGGTCAGCG TGTCGGACAC CTTCCAACTG GAGCCCGAGC AGACCACGAC CGCGATCATC
GTTCACCATC CTCAAGCGAA GTACTTCGTC GCCTAG
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| Protein sequence | MRTYEELLRE RVVVFDGAMG TNLQLAGLGA DDFGGPALEG CNEILVVTRP EAVAAVHDSF
LAVGVDVVET DTFGALAPVL AEYGIAERAY ELNLRAAQLA RDVASGYATP DHPRFVAGSM
GPGTKLPSLG QIPFEDLRDA YEVQAEGLIA GGVDLLLVET VYDLLSAKAA VIGARRAMRR
LGRSVPVQVQ VTIETTGRML PGTEVGAALA ALERLDPVAI GINCATGPEE MGEHLRYLSE
HQRVPISCLP NAGMPHVVDG HMHYDLTPDA LAAAHRRFVD ELGVGIVGGC CGTRPEHLRA
VVEAVGEAVP RERHPTPRAQ VASLYQAVEL RQDLAITAVG ERTNANGSRR FRDAMLARDW
DTCVRMAQDQ VRDGAHMIDL CVDYTGEDGT VAMEELSSRL ATASTLPIMI DSTEAAVVET
ALRHLGGRPI INSVNLEEGE GSNTRFDSFL RLAKDYGAAV VATCIDEEGQ ARTAARKVEI
AKRIVALAVE RYGLATDDII IDPLVLPVTT GMEESRRDAL ETIEALRRIT AEMPGVSTLV
GLSNVSFGIN AAAREALNSV FLAECQAAGL SMAILHPSRI QPLARIPEDV RAICLDLIYD
RRGQGDPLAR LIERFADVQA VAVTGEELEA LSVPERLHRR IVDANRQGLE DDLAAALGEG
MSALGVINDV LLPAMAEVGD LFGSGQMQLP FVLASAETMK QAVAWLEPYL DRASVNDRGT
VVLATVQGDV HDIGKNLVDI ILTNNGYRVV NLGIKVALSE MLAAAEEHHA DAIGMSGLLV
KSTLVMRDNL VEMNERGMAH LPVILGGAAL TRTFVERDLR QVYDGRVFYG KDAFEGLDVL
ERLGRIRRGE LDDPEFGRSI RQSSTRTPRL LRRSTSERTE RSPTVAMDNP IFRPPFLGTR
VVKGIALDDI AAYVNETALF RHQWGYRPEG DEDDAAFKQR LRAELRRQLD RALVDQSLVP
QVVYGYFVAA SEGNDLVVFA DEAREHELAR FRFPRQEQEP YLCIADFFRP LAGPEIDYVA
FHVVTMGPRI TEVAKRAFDE NRYQEYLLLH GLGVELTEAL AEYWHARIRA EWGFGDEDGP
TLAGLFRQQY RGSRYSWGYP ACPDLEDNRT VVDLLDAGRI GVSVSDTFQL EPEQTTTAII
VHHPQAKYFV A
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