| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Adeg_1568 |
|---|
| Symbol | |
|---|
| ID | 8491563 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ammonifex degensii KC4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013385 |
|---|
| Strand | - |
|---|
| Start bp | 1559915 |
|---|
| End bp | 1561309 |
|---|
| Gene Length | 1395 bp |
|---|
| Protein Length | 464 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 646359561 |
|---|
| Product | UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase |
|---|
| Protein accession | YP_003239513 |
|---|
| Protein GI | 260893416 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0770] UDP-N-acetylmuramyl pentapeptide synthase |
|---|
| TIGRFAM ID | [TIGR01143] UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATACCTC TGGAGGCCGG ACGCCTGGCC GAGATCATGG AGGCCCGTCT GATAAGAGGT
TCTCCCGACC GGATAGTTCG GGCCGTCTTC ACGGATACCC GGGAGGAGAT ACCGGAAGGG
GCCCTTTTCT TTGCTCTAAA GGGGGAGCGC TTCAACGGGC ACCATTTTGT CGCCGAGGCC
GGGGCCAAGG GAGCTTTAGG GGCGGTGGTC AGCCGGTTGC CCGAACAGCC TCTACCTCCC
GATTTCCTTA TCTTGGAGGT AACCGATGTG CTGGCGGCCC TGCAAAGGCT TGCGCACTAC
GTGCGGCGGG CCACCGGGCC TTTCTTGATA GGAGTGACGG GAAGTACTGG TAAAACCACT
ACCAAGGATC TCCTGGCCGC CGTGCTGGCG GTTAGGCACC GGGTGCTGGC TACCCGGGGC
AACCGCAACA ACGAAATAGG GGTTCCGCTT ACCCTACTGG AACTCGGACC AGAGCACGAG
TTCGCGGTGG TGGAGATGGC CATGCGCGGG GAGGGAGAGA TAGCTGCCCT CTCGGCTTTG
GCGGAACCTA ACGCGGCGGT GATAACCAAC ATCGGCGAGG CGCACCTGGA AAGGCTGGGG
AGCGTACGGG CCATCGCCCG GGCCAAGGGA GAAATTCTGG ACTACATTCC CCCGGAAGGC
TTCGCCGTGC TGCCAGCGGA GAGCCCCTTC ATCGAGGAGG AGGCCCGGCG CTGTCGGGGG
AAGGTGATCT ACTTCGGAGA AAGCGACAAA GCCCAGGTCC GCCTGCTTTC CTATACCTCC
CTGGGGGAGA AGGGGTGCGT TTTCCGGGTG CGCACCGCTA CAGGGGAGGA AGAGTATCAA
CTTCCTCTTC CGGGCTACCA CAACGCCTTG AACTGTACGG CTGTGATAGC GATAGCCAGG
CAACTTGGTT TCTCCCCGGA GGAAGTGCAG GAGGGTTTCC GCCGGGTACA AACAAGTGGT
ATGCGGTTGG AAATTGAGCA CTGGAGGGGC TTTACCGTGA TAAACGATGC TTACAACGCC
AATCCCGCCT CTATGGCGGG TGCTTTGGAG GTACTGGCCG AACTGGGAAA GGGCAGGCGC
AAGGTAGCGG TGCTGGGGGA CATGCTGGAG CTGGGTGAGA GGACGGTGGC AGCCCACCGG
GAAGTGGGGG AGAAAGCGGC GGCGGTGGCC GACCTGCTGG TGGTGGTGGG GGAAAGGGCC
CGCGACCTGG CGGCGGGCGC CTTGTCGGCC GGGATGCCCC CGGACAGGGT CCTGGCGGTA
GCCACGGTGG AAGAGGCCAT AAGGCAACTT ATGAACGAGC TTGAGGGGGA TGAGGTGCTT
CTGGTCAAAG CTTCCCGGGC CATGGGCTTG GAACGGGTGG TCCAGGCCCT CCGCCGGTGG
GGGGAAGGGC ATTGA
|
|---|
| Protein sequence | MIPLEAGRLA EIMEARLIRG SPDRIVRAVF TDTREEIPEG ALFFALKGER FNGHHFVAEA
GAKGALGAVV SRLPEQPLPP DFLILEVTDV LAALQRLAHY VRRATGPFLI GVTGSTGKTT
TKDLLAAVLA VRHRVLATRG NRNNEIGVPL TLLELGPEHE FAVVEMAMRG EGEIAALSAL
AEPNAAVITN IGEAHLERLG SVRAIARAKG EILDYIPPEG FAVLPAESPF IEEEARRCRG
KVIYFGESDK AQVRLLSYTS LGEKGCVFRV RTATGEEEYQ LPLPGYHNAL NCTAVIAIAR
QLGFSPEEVQ EGFRRVQTSG MRLEIEHWRG FTVINDAYNA NPASMAGALE VLAELGKGRR
KVAVLGDMLE LGERTVAAHR EVGEKAAAVA DLLVVVGERA RDLAAGALSA GMPPDRVLAV
ATVEEAIRQL MNELEGDEVL LVKASRAMGL ERVVQALRRW GEGH
|
|---|
| |