Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Adeg_1531 |
Symbol | |
ID | 8491525 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ammonifex degensii KC4 |
Kingdom | Bacteria |
Replicon accession | NC_013385 |
Strand | - |
Start bp | 1521568 |
End bp | 1525092 |
Gene Length | 3525 bp |
Protein Length | 1174 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 646359523 |
Product | DNA-directed RNA polymerase, beta' subunit |
Protein accession | YP_003239476 |
Protein GI | 260893379 |
COG category | [K] Transcription |
COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.00270247 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTGGAGC TCGACCGTTT TGACCGCATA CGCATAGGGC TGGCTTCACC TGAGCAGATC CGGGCCTGGT CGCACGGCGA AGTGAAAAAA CCGGAAACCA TCAACTACCG GACGCTGAAG CCCGAGCGCG ACGGCCTCTT TTGTGAGCGC ATTTTCGGTC CCACCAAGGA CTGGGAGTGC TACTGCGGCA AGTACAAGCG GGTGAGGTAC AAAGGGGTTA TCTGCGACCG CTGCGGAGTG GAAGTGACGC GGGCCAAGGT GCGCCGCGAG CGCCTGGGGC ACATTGAGCT TGCTGCTCCA GTTTCCCATA TATGGTACTT CAAGGGAATT CCTAGCCGCA TGGGCCTGCT CCTAGACATG TCCCCCCGGG CCCTGGAGAA GGTGTTATAC TTTGTCAACT ACATAGTGCT CGACCCGGGG GACACTCCCC TGGTGAAGAA GCAGCTACTG ACCGACGCGG AGTACCGGGA GTACCGGGAG AAGTACGGGG ACTCCTTCCG GGTCGGCATG GGGGCGGAGG CCATAAAGGA GCTCTTGGCA GAAATCGATC TCGACCAGCT CGCCCAGGAG CTCCGGCAAG AGATTAAGGA GAGCACGGGG CAACGGCGGG TAAGGGCCAT AAGACGCCTG GAGGTGGTGG AGGCCTTCCG CAAGTCGGGC AACCGGCCTG AGTGGATGAT CCTGGAGGTG CTGCCGGTCA TCCCGCCGGA GCTCCGTCCC ATGGTGCAGC TGGACGGCGG GCGCTTTGCC ACCTCCGACC TCAACGACCT TTACCGCCGG GTGATAAACC GGAACAACCG CCTCAAGCGC CTCTTGGAGC TGGGGGCGCC CGACATCATC GTGCGCAACG AGAAGCGCAT GCTGCAGGAG GCGGTGGATG CCCTTATCGA TAATGGCCGG CGGGGGCGGC CGGTTACCGG CCCCGGCAAC CGCCCCTTGA AGTCTTTGAG CGACATGCTC AAGGGCAAGC AGGGACGCTT CCGGCAGAAC CTCCTGGGGA AGCGGGTGGA CTACTCCGGC CGCTCGGTCA TCGTGGTCGG GCCCACACTC AAGCTTCACC AGTGCGGCCT GCCGCGGGAA ATGGCTTTGG AGCTTTTCAA GCCCTTTGTG ATGCACAAGC TTGTGAAGAA GGGACTGGCC CACAACATCA AGAGCGCCAA GCGCATGGTG GAGCGCATGC GGCCTGAGGT CTGGGGTGTC TTGGAAGAGG TGGTGAAGGA CCACCCCGTG CTCTTGAACC GCGCTCCCAC CCTGCACCGC CTGAGCATCC AGGCTTTTGA ACCGGTCCTG GTGGAAGGAA GGGCCATCCA GATCCATCCC CTGGTCTGCA CTGCCTACAA CGCCGACTTC GACGGCGACC AGATGGCAGT GCACGTGCCC CTTTCGGCAG AGGCCCAGGC CGAAGCCCGG CTCCTCATGC TTTCCACCAA CAATATCCTC TGCCCCAAAG ACGGCAAGCC CATCACCATT CCCACCCAGG ACATGGTGAT CGGCATTTAC TACCTCACCT TAGAGAAGCC GGGAGAGTTC GTGGAGGACC GGTTCTTTGC CGACCCGGAC GACGCCATCC GGGCTTACGA GATGGGTCTT GTACCTCTCC TGGCGCGGAT AAAGGTGCGC CTGCCGGGGA TAAAACTGCC GGGGCGCTGG CTGGAAACCA CCCCTGGTAG GCTTATCTTC TTCCAGGCAG TGCCGGAAGC CTTGCTAATT AAGCAGGACG AGGAAGGAAA CCGGGTACTT ACCTCGCTTG CCCAGCGCAT CCTGAGCGAG GTGACAGATA AGAAGCTCCT GGTGGAGATC ATTGACCGCT GCTACCGCCG GCTGGGGTTT GCCAAGACGG CCGAGTTCCT GGACAACATA AAGGAGCTGG GCTTTCGCTT TGCCACCAGG GCGGGTTTGA CCATTGGTCT GGAAGACCTC GAAGTGCCGG GGGAGAAGCC GGAGATATTG GCCCAGGCGG AAAAAGAGGT GGAGGAGGTC GAACGGCAGT ACCGGCGGGG GCTCATTACC AAGGAAGAGC GTTACCGTAA GGTCATCGGC ATATGGAGCG CTGTGACCGA GCGGATTAAG AACCTGCTGG TGGAAAAGCT CGACCAGTTC AACCCCGTCT ACATGATGGC TATATCCGGC GCGCGGGGTA ACATCCAGCA GATAAGGCAG TTGGCTGGCA TGCGGGGGCT CATGGCCGAT CCCTCGGGGC GGATCATTGA GGTACCCATC AGGGCGAGCT TCCGCGAAGG GCTTACCGTG CTGGAGTACT TCATTTCTAC CCACGGCGCC CGCAAAGGAC TGGCCGACAC TGCCTTGCGC ACCGCTGACT CCGGGTACCT CACCCGGCGG CTGGTGGACG TGGCCCAGGA TGTGATCGTG CGGGAGGAGG ATTGTGGCAC CGACGATTAC ATTGAAGTGG AAGACATCCG CGACGGCAAT GAGGTTATAG AGCCCCTGGC TGACCGGATC CTGGGCCGCA TTGCGGCGGA GGACATAGTG GATCCGCAAA AAGGGACGCT TATCTGCGCC AAGGGCGAAG AGATAGACGA AGAAGCGGTG GAGAAGATCA CAGCGGCCGG TATAAAGAAG GTAAAGATCC GCTCGGTGCT CACCTGCCGC ACTCGGCACG GGGTTTGCGC TCGCTGCTAC GGCCGCGACC TCGGTACCGG CTTCTTGGTG GAGATCGGCG AGGCGGTAGG GATCATTGCG GCCCAGTCCA TCGGCGAGCC CGGTACACAG CTTACCATGC GCACCTTCCA CACCGGCGGC GTGGCGGGTG AGGACATCAC CCAGGGTCTA CCGCGGGTGG AAGAGCTCTT CGAGGCCCGG CGGCCGCGGG GCCAGGCCAT TATAGCGGAG GCGCCCGGCG TGGTAGAGGT GCGGGAGGTC AAGGGACGGC GGGAGATCGA ACTCGTCAAG GATGATGGCG AGCGGGTGGT CTACCAGGTT CCCTTCGGTG CCCGGATCAA GGTGAAGACG GGTGACCGGG TGGAGGCTGG CGATGAACTC ACCGAAGGCT CGGTCAACCC GCATGACCTC TTAAGGATAA AGGGAATGAA GGCGGCGCAG CTCTACCTCC TGCGGGAGGT GCAGCGCGTT TACCGCATGC AAGGGGTGGA GATCAACGAC AAGCACATAG AGATCATCAT CCGCCAGATG TCCAAGAAGA TAAAGGTAGA GGATCCGGGC GACACCGAGC TTCTGCCGGG AAGCCTGGTA GACTGGTACG AGTTTGAGGA CGAGAATGCC CGGGTAGAAG CTCAGGGCGG GCAGAAGGCT GTGGGCCGCC CGGTGATTCT GGGGATTACC AAGGCTTCCT TGGCCACAGA CTCTTTCCTG GCCGCGGCTT CCTTCCAGGA GACCACCCGG GTGCTGACCG ACGCAGCTAT CAAGGGTAAG GTTGATCCGC TGATCGGCCT CAAAGAGAAC GTGATCATAG GGAAACTCAT CCCTGCGGGT ACGGGTCTCA ACCGTTACCG CAGCATCAAA GTGGTGGCCG AGGAAGAGAA GAAAGCGGCA GCCGAAGAGG CCTAA
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Protein sequence | MLELDRFDRI RIGLASPEQI RAWSHGEVKK PETINYRTLK PERDGLFCER IFGPTKDWEC YCGKYKRVRY KGVICDRCGV EVTRAKVRRE RLGHIELAAP VSHIWYFKGI PSRMGLLLDM SPRALEKVLY FVNYIVLDPG DTPLVKKQLL TDAEYREYRE KYGDSFRVGM GAEAIKELLA EIDLDQLAQE LRQEIKESTG QRRVRAIRRL EVVEAFRKSG NRPEWMILEV LPVIPPELRP MVQLDGGRFA TSDLNDLYRR VINRNNRLKR LLELGAPDII VRNEKRMLQE AVDALIDNGR RGRPVTGPGN RPLKSLSDML KGKQGRFRQN LLGKRVDYSG RSVIVVGPTL KLHQCGLPRE MALELFKPFV MHKLVKKGLA HNIKSAKRMV ERMRPEVWGV LEEVVKDHPV LLNRAPTLHR LSIQAFEPVL VEGRAIQIHP LVCTAYNADF DGDQMAVHVP LSAEAQAEAR LLMLSTNNIL CPKDGKPITI PTQDMVIGIY YLTLEKPGEF VEDRFFADPD DAIRAYEMGL VPLLARIKVR LPGIKLPGRW LETTPGRLIF FQAVPEALLI KQDEEGNRVL TSLAQRILSE VTDKKLLVEI IDRCYRRLGF AKTAEFLDNI KELGFRFATR AGLTIGLEDL EVPGEKPEIL AQAEKEVEEV ERQYRRGLIT KEERYRKVIG IWSAVTERIK NLLVEKLDQF NPVYMMAISG ARGNIQQIRQ LAGMRGLMAD PSGRIIEVPI RASFREGLTV LEYFISTHGA RKGLADTALR TADSGYLTRR LVDVAQDVIV REEDCGTDDY IEVEDIRDGN EVIEPLADRI LGRIAAEDIV DPQKGTLICA KGEEIDEEAV EKITAAGIKK VKIRSVLTCR TRHGVCARCY GRDLGTGFLV EIGEAVGIIA AQSIGEPGTQ LTMRTFHTGG VAGEDITQGL PRVEELFEAR RPRGQAIIAE APGVVEVREV KGRREIELVK DDGERVVYQV PFGARIKVKT GDRVEAGDEL TEGSVNPHDL LRIKGMKAAQ LYLLREVQRV YRMQGVEIND KHIEIIIRQM SKKIKVEDPG DTELLPGSLV DWYEFEDENA RVEAQGGQKA VGRPVILGIT KASLATDSFL AAASFQETTR VLTDAAIKGK VDPLIGLKEN VIIGKLIPAG TGLNRYRSIK VVAEEEKKAA AEEA
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