| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Acry_2789 |
|---|
| Symbol | |
|---|
| ID | 5160877 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidiphilium cryptum JF-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009484 |
|---|
| Strand | - |
|---|
| Start bp | 3053056 |
|---|
| End bp | 3055062 |
|---|
| Gene Length | 2007 bp |
|---|
| Protein Length | 668 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640554716 |
|---|
| Product | Fis family GAF modulated sigma54 specific transcriptional regulator |
|---|
| Protein accession | YP_001235899 |
|---|
| Protein GI | 148261772 |
|---|
| COG category | [K] Transcription
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG3284] Transcriptional activator of acetoin/glycerol metabolism |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCGACG CAAGTCATGA CATGATGTAC GCGGCGGCGA CGTCCGCCGC AAAATCAAGC
CGTGCGGCAA GCGGTTCCGC CGGACGCGAG GACTACATCG AAGCCGCCTG GCGGCGATGC
CGAGACGATT ACAGGCTGAA TCCCGAAGCA CCGCCGGCAG CCGTTCATGT GGGCGGCGCG
GCGCTGCGGC AGATCCGCGA GGAACATGCG TTGTTCGAGC GCCTCGGCCG GGTCGAGATG
CACAGGCTGC TTGGCCAGAT CAGCCAGCAG GTCGCCCAGT CCGCCACGGC ATCGCGCTAC
GTTCTGATGC TGACCGATGC CGACGGCACC GTGCTCGACG TGTTCACCGA TGCGGCGAAT
GCCGAGCGGG CGCGTGCCGC AAACATGATG CCTGGCTACA TGTGGGACGA GCAGCACGCC
GGCGTGAACG GTCCGGGGAC GTCGCTGCAC GACCGGCGTT CACGCGTTGT GCATCGCGAG
GAACATTACT TCACCCGCAA CAGCCGGATG ACCTGTTCGG CAGCGCCGAT CTGGGGCGCG
AACGGCAGGC TGCTGGGCGC GATCGACGCG ACATGCCTTG ATTGTGATGA CAGCCGCGCC
GCCCAGGTGC CGACGATCGC ACTCGTCAGC ATGTCGGCGC GCATCATCGA GCAACTGCAT
TTCACCAACA GTTTCCGTGA CTGCATGATC ATGCGCTTCC ATGAGCGCCC CGAACTCGTC
GGCCTGCCGT ATGATTCCCT CCTGGCGGTT GATTCGGACG GACTGATCCG CGCGGTTGAC
AATTCCGTGC CCTCGATGCT GGGCGCCGCC GGATACAATA CGCTGGTCGG TCGCAGCGTG
GCCGAAGTCT TCGACATTTC GCTGGACCGT CTGCTGGAGC ATGCCGAAAC CCAGCCCTTC
GCCATCTGGC CGATCGCGCA CGGAAACGAC AGGCACGGCT ATGCCAGCGT CTGGCCGGCG
AAACAGACCC GCGCCCGCGC CCGCGCCGTC GTCAGCGCGC GCAATGCGCT GGTGGAGCGC
GCACCGCTGC GGCCGCCGGC CGAGATGCGG CAACGCAAGC CTGAGCCGCG GGAACTCGTG
GCGCTGGCCG GCGCCGACCG GGCCATGGCG CACAACGTGT GGCGCGCCGA GCGCGTCATG
AACCGGGACA TCAACATCCT GCTCCTCGGC GAGACCGGCA CCGGGAAGGA TACCTTCGCC
CGCGCGATTC ACCGCGCGAG CAATCGCCAT GCCGCGCCGT TCGTCGCAAT GAGCTGCGCG
GCAATTCCCG AGCAGCTCAT CGAAAGCGAA CTGTTCGGCT ACGAAACCGG CGCTTTCACC
GGCGCGCGGC CGGGCGGCAT GCGCGGCAAG GCGGTGGCCG CGCATGGCGG CACGCTGTTC
CTCGACGAAA TCGGCGACAT GCCGCTTTCC ATTCAGGCCC GCCTGCTGCG GCTGCTGGAA
GAAAAGGAGA TCGTGCCGCT CGGCAGTTCC ACGCCGACTC CGGTGGACAT CAAGGTCATC
AGCGCGACCC ATCGCGACCT TGAAGCGATG GTGGCGCGCG GCGAGTTCCG CATGGACCTC
TATTACCGGC TCAACGGCCT GTCGCTGACG ATGCCCGCCT TGCGGCAACG CTCTGACCGG
CAGGACCTGA TCGAGACACT CTGCGCCGAG GAAAGTGAGG GCGCATCGAT CTCCATTACC
CCCGCCGCGA TGCAGGCGCT GATCGAGCAC GACTGGCCCG GCAATATCCG CGAACTGCGC
AACACGCTGC GTACCGCCCT GGCTTTCGCC GAAGCCGGGC GCATCGAGGT GCATCACCTC
CCGCACATGA TCGTCCGCAC CATGCCCGCG CACGGCCCAG TCCCGCCGCA GCCCCTGGCA
GAGGAAGATC CCGAGCGCGA ACGGATCGTC GCGGCACTCG AACGGCATCA CTGGCGTATC
GCCGCCACGG CATCCAGCCT CGGCATCAGC CGCAACACGC TCTACCGGAA GCTGCACCGC
TACGGCCTGA TGAACGAACC GCATTGA
|
|---|
| Protein sequence | MTDASHDMMY AAATSAAKSS RAASGSAGRE DYIEAAWRRC RDDYRLNPEA PPAAVHVGGA
ALRQIREEHA LFERLGRVEM HRLLGQISQQ VAQSATASRY VLMLTDADGT VLDVFTDAAN
AERARAANMM PGYMWDEQHA GVNGPGTSLH DRRSRVVHRE EHYFTRNSRM TCSAAPIWGA
NGRLLGAIDA TCLDCDDSRA AQVPTIALVS MSARIIEQLH FTNSFRDCMI MRFHERPELV
GLPYDSLLAV DSDGLIRAVD NSVPSMLGAA GYNTLVGRSV AEVFDISLDR LLEHAETQPF
AIWPIAHGND RHGYASVWPA KQTRARARAV VSARNALVER APLRPPAEMR QRKPEPRELV
ALAGADRAMA HNVWRAERVM NRDINILLLG ETGTGKDTFA RAIHRASNRH AAPFVAMSCA
AIPEQLIESE LFGYETGAFT GARPGGMRGK AVAAHGGTLF LDEIGDMPLS IQARLLRLLE
EKEIVPLGSS TPTPVDIKVI SATHRDLEAM VARGEFRMDL YYRLNGLSLT MPALRQRSDR
QDLIETLCAE ESEGASISIT PAAMQALIEH DWPGNIRELR NTLRTALAFA EAGRIEVHHL
PHMIVRTMPA HGPVPPQPLA EEDPERERIV AALERHHWRI AATASSLGIS RNTLYRKLHR
YGLMNEPH
|
|---|
| |