| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Acry_2088 |
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| Symbol | |
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| ID | 5160429 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidiphilium cryptum JF-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009484 |
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| Strand | - |
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| Start bp | 2298110 |
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| End bp | 2301637 |
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| Gene Length | 3528 bp |
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| Protein Length | 1175 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 640554010 |
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| Product | ImcF domain-containing protein |
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| Protein accession | YP_001235206 |
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| Protein GI | 148261079 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3523] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03348] type VI secretion protein IcmF |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCGCAC GGCTGGTCCG CTGGCTGCTG AGCGGCGTCG GCGCCGCGAT CATCGCGGCC
CTGGTCTGGT TCTTCGGCCC CTTCCTCGCC GTGCTCGCCG GCATCCTGCC GCGCGCGGCG
ATCGCTGTCC TGGTGTTCGT GATCTGGCTT GCGGCCAATC TCTGGCTCGA TCGCCGCGCC
CGCAAGAAGG CGGCCGCCGT CGAAGAGGCG ATCACCGAGA CCCAGGCCGA CCCCGAGGCC
GGCATGCGGG CGGAGGAAGT CGCCGCGCTG GCGGACAAGA TGAAGAAGGC GCTCGGCATC
CTCGCCCGGG CGCGCGGCCG GCGCGGCTTT CTCTACGAAC AGCCCTGGTA CGTCATCATC
GGCCCGCCCG GCGCCGGCAA GACCACCGCG CTGCTCAATG CCGGGCTGAA CTTTCCGCTC
GCCGCCGAGC TCGGCCAAGG GGCGGTCGCC GGTGTCGGCG GCACCCGCTA TTGCGACTGG
TGGTTCACCG ACCAGGCGGT GATGATCGAC ACCGCCGGCC GCTACACGAC GCAGGATTCC
TCGGCGTCGG TCGACCAGGC CGGCTGGCAC GGCTTCCTCG ACCTGCTGCG CCGCACCCGG
CCGCGCCAGC CGCTGAACGG CGTGATCGTC GCCATCGCCC TGTCCGACAT CGCCCAGGCC
GACGCCGCGG CCCGCGCCGC CCATGCGCGC GCCATCCGCG CGCGGATCAA GGAGATCAAC
ACCCGCCTCG GCGTCACCGT GCCGGTCTAC GCGCTGTTCA CCAAGGCCGA CCTGATCGCC
GGCTTCACCG AGTTCCATGA CGATCTCGAC ACCGCCGGCC GCGCGCAGGT CTGGGGCATG
ACCTTTCCGC CCGATCGCAC GCCGGCGGGC ATGGCGGGCC GGTTCGCCGC CGAGTTCCGC
GAGCTGGTCG GCCGCGTGGA AGAGCGCATG CTCGACCGCC TCGCCGCCGA ACGCAGCCCG
GATCGCCGCT CGCTCATCGC CGGCTTCCCG ATGCAGGTCG CGAGCCTGCA GGCGCCGCTG
GAGGCCTTCC TGAACGAGGC GTTCGCCGGC TCCCAGCTCG ATCCCGCGCC GTGGCTACGC
GGGGTCTATC TCTGCTCGGG CACGCAGGAA GGCACGCCGA TCGACCGTCT GACCGGCGCG
CTGGCCCGCA GCTTCGGCAT CGACCAGCGG CGCGCGCCCA GCCTGCGGCC GCAATCCGGC
CGCTCCTATT TCCTTGGCCG GCTGATCGGC GAGGTGATCT TCGGCGAGGC CATGCTGGGC
TCGGCGGACC GGTCCGGCGC CCGGCGCCGC CTCGCGCTGC GCGGCGCGGG GTTCGGCGCG
GTCGGCCTCG TGTTCGTCGT GCTGCTCGCG GCGCTGTTCC GCAGCCATGC CGACAATGCC
GCCGCCATCG CCCGCGCGCG CGCCGGGCTT GCCGCCGAAC AGAAGGTCGC GGCGCAGATC
CGGCTCGATC CGGTCGCCAG CGCCGATCTG TCGCGGATCG CGCCGCTGCT GCGCGAGGCC
CGCGACCTTG CCGGCGCGCC CCCCGAGCGC GGCTATCACG GTATCGGCCT CGACCAGGGC
GCCTCGATCA GGGCTGCGAC CGCCGCCGTC TACCGCAACG TGCTCGACCA TGCGCTGCTG
CCGCGCCTCG TGCTTCAGCT CGAGGCGGAA ATGCGCGGCG GGCTCGACCG GCCGGATTTC
CTGTATCAGG CGACCCGCGT CTATCTCATG CTCGGCAATC AGGGACCGCT CGACGCCTCG
CTGGTCGAGG CCTGGATGAA GCTCGACTGG CGGCGCCTCT ATCCGGGCTT CGGCCAGACC
GCGTTGCGCC ATTCGCTGAT GCGGGACCTG ACCGCGCTGC TCGCCCGCCC GCTGCCGGAC
GTTCCGCTGG ACGGCCAGCT GATCGCCACC GCGCGCGCGA CCTTCTCGCG CGTGCCGATC
GCCGAGCGGG TCTATTCCCG CATCCGCGAT TCCGAGGCGG CGTCCCGCGT GCCGGCCTGG
ACGCCGGCGG CGGCGCTGGG GGCTGCCGGA ACGCCCTATT TCGTCAACGC CACCGGCAAG
CCGCTGACCG ATGGCGTGCC CGGCTTCTTC ACCAAGCGCG GCTTCTACAC CGTGCTGCTG
CCGGCCCTCA CCCATGCGAC ACAGGATGTC GCCAGGGAAA GCTGGGTGCT CGGCGCACAG
GACCGGATCA AGCCGGATTC GCCGCAGATG CAGTCGCTCG AGCAGGATGT GATCCGGCTC
TATGACACCG CCTATGCCCG GCACTGGCAG TCGATGATCG ACGACCTCAA TATCGCGCCC
CTCGGCTCCG CGGGCCAGGC CGTGCAGGCG CTCTACGTGC TTGGCTCGCC CCAATCGCCG
ATGGTGCGGC TGCTGTCGTC GATGGCGGAC GAGCTTACGC TCACCAAACC CCCGAAAGAC
CTTGCGAAGG CCGCCAAGGG GGCGACGGGC GCCGAGGCGA AGCTGCGGGC ACCGGCCAAG
CTGAACGAAG CGGCGACGCG GCTGAAGCAG TTGCTGGGCC CGCAGGCGTC AGGCGCCCCG
GCCCCGAAGC CCGGGGCGGC AATCAACGCC GAGTTCGCGC CGCTGCGCAA TTATGTGGGC
AACGGCGCGG CAGGCTCTCC GCTCTCGCTG ACATTGCAAC TGATCGACCA GGTGCAGAAG
CAGCTGGCAA CCCTCGCCGC CACGGCGCCC GGCGCGGCGG GCCCCGCGTC CCCCGCCGCC
GGCGGCGATG CGGCCCAGCT CCTTGCCGGC GAGGCGCAGC ACGATCCGCA GCCGGTCAGC
CGCTGGCTCG GCGCGATCGT CGCGACATCG AACAGCCTGC GCGGCGGCAG CGCCGCGGCG
GCGGCGGCGG CGGCGTTCAA GGCGCCGGGC GGTGCCGCGG CACTCTGCGA GAAGGCGGTG
ACCGGCCATT ACCCGTTCGA TGCAAGTGCC GCCTCGGGCA TTCCGCTTGC CGATTTCGCC
CGTCTCTTCG CGCCGGGCGG CGTGATGGAC AATTTCTTCA ACACGCAGGT GCGGCCCTTC
GTGAACATGA CCGGGCAGGT ATGGACGGTG CAGCCGGTGA ACGGCGTGGC GCCGCCGGTC
AGCCAGGGGG CCGTCGCGGA ATTCCAGCGC GCGCAGGAAA TCCAGCAGAT GTTCTTCCTG
GGCGGCACGC AGCCCAGCGT GCAGTTCACG GTCACGCCCG CCGGCCTCTC GGCGGGCGCG
GCACAGGTCG TGCTGCAGCT TGGCGGCGTC GATGTCAGCT ACGCCCACGG CCCGACGGTG
CCGACCTCGG TGAACTGGCC GGGTGCCACC GGCATGCAGA CGGCCCGGCT GATCATCACG
CCGGCCGCCG GCGGCACGCC GGTCACGCTT CAGGCCAGCG GTCCCTGGGC GGTGTTTCGC
CTGTTCGGCA TGGGGCGGCT CACGCGTGAC GGCAGCTCCG CCCGCTACAC CCTCACCTTC
GATCAGGGGG GCATGCAGGC GCGCTTCACG CTCGAGGCGG GGTCGATCTT CAACCCGTTC
GCGCCGGGCG TGCTGAACGA CTTCCGCTGC CCGAGCCTCA AAGGATGA
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| Protein sequence | MSARLVRWLL SGVGAAIIAA LVWFFGPFLA VLAGILPRAA IAVLVFVIWL AANLWLDRRA
RKKAAAVEEA ITETQADPEA GMRAEEVAAL ADKMKKALGI LARARGRRGF LYEQPWYVII
GPPGAGKTTA LLNAGLNFPL AAELGQGAVA GVGGTRYCDW WFTDQAVMID TAGRYTTQDS
SASVDQAGWH GFLDLLRRTR PRQPLNGVIV AIALSDIAQA DAAARAAHAR AIRARIKEIN
TRLGVTVPVY ALFTKADLIA GFTEFHDDLD TAGRAQVWGM TFPPDRTPAG MAGRFAAEFR
ELVGRVEERM LDRLAAERSP DRRSLIAGFP MQVASLQAPL EAFLNEAFAG SQLDPAPWLR
GVYLCSGTQE GTPIDRLTGA LARSFGIDQR RAPSLRPQSG RSYFLGRLIG EVIFGEAMLG
SADRSGARRR LALRGAGFGA VGLVFVVLLA ALFRSHADNA AAIARARAGL AAEQKVAAQI
RLDPVASADL SRIAPLLREA RDLAGAPPER GYHGIGLDQG ASIRAATAAV YRNVLDHALL
PRLVLQLEAE MRGGLDRPDF LYQATRVYLM LGNQGPLDAS LVEAWMKLDW RRLYPGFGQT
ALRHSLMRDL TALLARPLPD VPLDGQLIAT ARATFSRVPI AERVYSRIRD SEAASRVPAW
TPAAALGAAG TPYFVNATGK PLTDGVPGFF TKRGFYTVLL PALTHATQDV ARESWVLGAQ
DRIKPDSPQM QSLEQDVIRL YDTAYARHWQ SMIDDLNIAP LGSAGQAVQA LYVLGSPQSP
MVRLLSSMAD ELTLTKPPKD LAKAAKGATG AEAKLRAPAK LNEAATRLKQ LLGPQASGAP
APKPGAAINA EFAPLRNYVG NGAAGSPLSL TLQLIDQVQK QLATLAATAP GAAGPASPAA
GGDAAQLLAG EAQHDPQPVS RWLGAIVATS NSLRGGSAAA AAAAAFKAPG GAAALCEKAV
TGHYPFDASA ASGIPLADFA RLFAPGGVMD NFFNTQVRPF VNMTGQVWTV QPVNGVAPPV
SQGAVAEFQR AQEIQQMFFL GGTQPSVQFT VTPAGLSAGA AQVVLQLGGV DVSYAHGPTV
PTSVNWPGAT GMQTARLIIT PAAGGTPVTL QASGPWAVFR LFGMGRLTRD GSSARYTLTF
DQGGMQARFT LEAGSIFNPF APGVLNDFRC PSLKG
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