| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Acid345_3748 |
|---|
| Symbol | |
|---|
| ID | 4069323 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Koribacter versatilis Ellin345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008009 |
|---|
| Strand | + |
|---|
| Start bp | 4421127 |
|---|
| End bp | 4421762 |
|---|
| Gene Length | 636 bp |
|---|
| Protein Length | 211 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 637985770 |
|---|
| Product | two component LuxR family transcriptional regulator |
|---|
| Protein accession | YP_592822 |
|---|
| Protein GI | 94970774 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.107866 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGGCGGTCG CTGCAAGCAA GTCGATCCGG ATCCTCAGCG TGGAAGACCA CCCGGTCGTT
CGCGAAGGAC TTGTTTCGAT TATCGGTTCT CAGCCGGACA TGGTGCTCGT CGCCCAAGCC
ACCAATGGTA GCGATGCCAT TGCTCAGTTC CGCACCCATC ACCCTGACAT CACTCTGATG
GATCTTCGCC TCCCTGGCAT CAGCGGCACA GATGCGCTGA TCTCAATCCG TGGCGAGTTT
CCCAGGGCAC GCGTCATTAT TCTCACGACA TCCGACAGCC ATACGGAAAT CGACCGCGCT
CTGCGCGCAG GCGCTGCGGC CTATATTCTG AAGAGCATGC CCATGAACGA GATGCTTGCC
GTGATTCGCT CGGTGCATGC CGGCGCACGC CACATTCCGC AGGAAGTGGC TTCCCGACTC
GCCGAGAATA TTGGAGAAGA AAGCCTAACC TCGCGGGAAC TAGAAGTGCT GCATCTGATT
CGCGATGGCC ATCGCAACAA GCAGATCGCG GATGAGCTGT CGATTTCAGA AACCACGGTG
AATTTCCATA TCAAGAACAT TGTGGGCAAG ATGGGAGCAA ACGATCGCAC CCATGCTGTA
ACGATCGCAG TTCGCCGCGG CCTTCTTCAG ATCTGA
|
|---|
| Protein sequence | MAVAASKSIR ILSVEDHPVV REGLVSIIGS QPDMVLVAQA TNGSDAIAQF RTHHPDITLM
DLRLPGISGT DALISIRGEF PRARVIILTT SDSHTEIDRA LRAGAAAYIL KSMPMNEMLA
VIRSVHAGAR HIPQEVASRL AENIGEESLT SRELEVLHLI RDGHRNKQIA DELSISETTV
NFHIKNIVGK MGANDRTHAV TIAVRRGLLQ I
|
|---|
| |