| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Acid345_3738 |
|---|
| Symbol | |
|---|
| ID | 4069314 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Koribacter versatilis Ellin345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008009 |
|---|
| Strand | - |
|---|
| Start bp | 4413837 |
|---|
| End bp | 4414595 |
|---|
| Gene Length | 759 bp |
|---|
| Protein Length | 252 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 637985761 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_592813 |
|---|
| Protein GI | 94970765 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.87063 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGCAA CCAAAGCACT TCAAGATAAA GTCGCGCTCA TCACTGGCGG CAGTTCGGGA
ATAGGACTCG CAACAGCGAA ACGCTTCGTT GACGAAGGTG CTTTCGTGTT CCTTACAGGA
CGGAGAGAAC CTGAGCTTCT GGCGGCGGCA AATGAGTTGG GTCCAAGCGC AATCGCGATT
CGCACCGATT CTTCGCTCAT CTCCGACGTG GAGAAAATTC TCGCAAGGAT CAGAGAAACA
AAGGGGAAGC TCGATATTCT GTTCGCAAAT GCCGGAATTG GTGAGTTCCT TCCGTTGGGA
GTGATTACCG AGGAGCACTT TGACAAGATC TTCTCTACCA ACGTCAAAGG GATCGTCTTC
CTGGTGCAAA AGGCTCTTCC ACTGATGCCC TCAGGGTCGA GCATCGTCCT CAATGCCTCC
ATCGCATCGA TCAAGGGCAT GCCGGCATTC AGCATCTACA GTGCCAGCAA GGCAGCTTTG
CGCTCATTCG CCCGTTCATG GACCACAGAT CTAAGGCGAC AGCAGATTCG CGTGAATGCC
GTCAGCCCTG GCGTCATTTC CACTCCAGGT TATGACGGCC TCGGTCTTTC TAAGCAAGAG
ATGGAAACCT TTCTCAAGAC CAACGCCGAG ACGATTCCAC TTGGGAGAGT AGGAACCCCC
GACGAAGTGG CAAAGGCGGT GGTATTCCTT TCTTCAGACG AGAGCAGCTA CATTAGCGGC
ATCGAACTTT TTGTGGACGG CGGACTCGCG CAGATCTAG
|
|---|
| Protein sequence | MKATKALQDK VALITGGSSG IGLATAKRFV DEGAFVFLTG RREPELLAAA NELGPSAIAI
RTDSSLISDV EKILARIRET KGKLDILFAN AGIGEFLPLG VITEEHFDKI FSTNVKGIVF
LVQKALPLMP SGSSIVLNAS IASIKGMPAF SIYSASKAAL RSFARSWTTD LRRQQIRVNA
VSPGVISTPG YDGLGLSKQE METFLKTNAE TIPLGRVGTP DEVAKAVVFL SSDESSYISG
IELFVDGGLA QI
|
|---|
| |