Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Acid345_3647 |
Symbol | |
ID | 4072250 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Candidatus Koribacter versatilis Ellin345 |
Kingdom | Bacteria |
Replicon accession | NC_008009 |
Strand | - |
Start bp | 4315652 |
End bp | 4318117 |
Gene Length | 2466 bp |
Protein Length | 821 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637985670 |
Product | ABC efflux pump, inner membrane subunit |
Protein accession | YP_592722 |
Protein GI | 94970674 |
COG category | [V] Defense mechanisms |
COG ID | [COG0577] ABC-type antimicrobial peptide transport system, permease component |
TIGRFAM ID | [TIGR03434] Acidobacterial duplicated orphan permease |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.737099 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCGACTG GAAAGGAGTT CGGAATGGCG AGAGTGAAAC AGGACCTACG CTATGCGCTG CGTCACCTGC TGCGCAGCCC GGGATTCACC GTGTCGGCAG TGATCACACT GGCGCTTGGC ATCGGCGCGA ACCTCGTCGT GTTCCTGCTG CTCTACGGCG TCATTCTGCG ACCATTGCCG TTCTCGCATC CTGAACAGTT GGTGCGTATC GCACGCGCTT ACCCCGGCAG TGGCGACAGC AACGCCTATT CCGCGACCAA GATCCTTTTT TTCTCGCGCA CCAATCGCAG CTTTGAGTCT GTCGCCGGCT ACGACTACTT TCCACACAGC GTGAATTTGA TGGAGCAGCA GGCCGCGATT CCGCTGCAAT CGCTGGGTGT GTCCTCGAAC TTCTTCCACG TTTTTGCCAT GGAGCCCATG CTCGGTCACG GCTTCGCCCC GGAAGACATG CAACCCGGCG CCGCTGGCGT CGCAGTGCTC AGCGATGCCA CTTGGCGTCG CCAGTTCAAT GCCGATCCCA ATATCGTGGG ACGAGCGATC ACTCTCGGCA GCGAGAAGTA CACCGTCGTC GGGGTTGCGA ACCCAAAGTT TCAGCTCGAT AACAAGATCG ATATCTGGAC CACTCTGCAC CTGAAAGAAG ATGCCGAGAA CCACGACAAC AATTACAACG TCGTGGCGCG ACTCAAGTCC GGCGTAACTC CCGCCATGGC GCAGGACGAC CTGAAGCGAG TTTTGCTTCA GTTGAAAGAT ACCTATCCCG ATTTATGGTC AGCCCAGGAA AGCGCTCATG TTTGGGACTA CCACGCTTCG CTCGTTGGTG ACGTGAAGCC TGCGCTCAAC ATCCTGATGG GAGCAGTCGG AATTCTTCTC GTGGTCGTGG CCGCGAACAT CCTCAGCCTC TTGTTAACGC GCGCGATTTC CCGTCGCCGT GAGATGAGCG TTCGCGTCGC GCTCGGCGCC ACCGGCGGAC GACTGCTGCA GCAAATGCTC GTCGAGAACT TGTTGCTCTG CGCGCTGGGC GCTGTCGCCG GAATCGCGCT CGCGCAATTT ACCGCGCCGG TCATCCTGCA TCTCACGCCG ATCCAGTTGC CGGCTTTCGC TTCGCTGCAC GTTGGATCTT CCGGCGTGGC CTTCGCTGCT GGCCTCGCAG TGCTTTGCGC CGTTCTGTTC AGCCTCGTGC CGGCATTGGA ATCGCGCCGT GTGCACTTGA ACGATTCTTT GCGCTTGAAC ACCACGCGCA TCGCCCCGGG ACGAGTGCCC GCGCAGCGCG TGCTCGTGGT TGGCGAAGTG GCGATGTCGT TGGTTCTACT CGTCGCCGCA GCTTTGTTGC TCGGAAGCTT CTGGAAGCTG GTGCATATCG CGCCGGGCTT CGATCCCGCG AACACCGCAA CCTTCAAGAC CGGCTTGTCT GTCGCACAGA CGTCTACTGG CGCCGCGTTC GGCCAGACGC TCGACACGCT TGCGGCGCAT ACCGAAGCGC TGCCCGGTGT GGAGTCGGCG GCTGCGGTCA TCGGCGCGCC AATGGAGCCC GTGCCTGATC TTCCGTTCGA CATCGCGGGC CGTCCCGCAC CCAGCGACGG CAGCTCGTAT GACGAGAAGT ACGTTCCCAT CACTGCCGAC TATTTCACGA CTCTGAAGAT TCCTGTCGCC GCAGGCCGCG CTTTCACCAT GGCCGACAAC AAATCGTCGG CGCCGGTGCT GATCGTCAAC GAACAATTCG TGCACACCTA CTTCCCGAAG GAAAATCCGA TCGGCCAGCA TGTTCAGATC GGCAAGGCGA TGGGACCAGA TTTCGCTGAT CCCGTTCGCG AGATCGTTGG TGTGGTCGGC AACGTGAAAC AGCTCGGGCT CGAGCAACGT GCGCCAGAAA TGATGTATCT GCCTGCCGGA CAAGTTCCCG ACAAAATGGT CCAGTTGATC GGCCAGTCGC GCGGGATGAC CTGGGTCGTG CGCAAGAAGT CCGCGAATGT GGATCTCGCG AATGCGCTGC GCGGTGTCTT TCTCGACACC GCACAGTTGC CCATCGCGGG CATGACGACG ATGGACCACC TGATGAGCGA TTCCGTGGCG CAGCAGCGCT TCAGCATGAT GCTGCTCTCC GGCTTCGGCC TGATCGCGCT CTTCCTCGGC GCCGCGGGTC TCTATGGCGT GATGTCGTAC ACCGTCGCGC GCCAGACCAA AGAGATTGGC GTCCGCATGG CGCTTGGCGC GGCGCGTGGC GACATCCTAC GCATGGTTTT GCGCGAGGCC GGAATCCTCG TCGGAATCGG ACTTCTCGTT GGAGTGCTGG CCTCGATTGC CGGCGGCCGC CTCATGAGCA GTATGTTGTT TGGCGTTGCC CCGCGCGATC CTATCGCTCT CTTGGCGGGC AGTGGAGTCC TGCTACTGAC GGGTTTGTTC GCTGCATGGT GGCCGGCCCG GCGCGCAGCC TCCACCGAGC CGATGGAAGC TTTGCGCATC GAGTAG
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Protein sequence | MATGKEFGMA RVKQDLRYAL RHLLRSPGFT VSAVITLALG IGANLVVFLL LYGVILRPLP FSHPEQLVRI ARAYPGSGDS NAYSATKILF FSRTNRSFES VAGYDYFPHS VNLMEQQAAI PLQSLGVSSN FFHVFAMEPM LGHGFAPEDM QPGAAGVAVL SDATWRRQFN ADPNIVGRAI TLGSEKYTVV GVANPKFQLD NKIDIWTTLH LKEDAENHDN NYNVVARLKS GVTPAMAQDD LKRVLLQLKD TYPDLWSAQE SAHVWDYHAS LVGDVKPALN ILMGAVGILL VVVAANILSL LLTRAISRRR EMSVRVALGA TGGRLLQQML VENLLLCALG AVAGIALAQF TAPVILHLTP IQLPAFASLH VGSSGVAFAA GLAVLCAVLF SLVPALESRR VHLNDSLRLN TTRIAPGRVP AQRVLVVGEV AMSLVLLVAA ALLLGSFWKL VHIAPGFDPA NTATFKTGLS VAQTSTGAAF GQTLDTLAAH TEALPGVESA AAVIGAPMEP VPDLPFDIAG RPAPSDGSSY DEKYVPITAD YFTTLKIPVA AGRAFTMADN KSSAPVLIVN EQFVHTYFPK ENPIGQHVQI GKAMGPDFAD PVREIVGVVG NVKQLGLEQR APEMMYLPAG QVPDKMVQLI GQSRGMTWVV RKKSANVDLA NALRGVFLDT AQLPIAGMTT MDHLMSDSVA QQRFSMMLLS GFGLIALFLG AAGLYGVMSY TVARQTKEIG VRMALGAARG DILRMVLREA GILVGIGLLV GVLASIAGGR LMSSMLFGVA PRDPIALLAG SGVLLLTGLF AAWWPARRAA STEPMEALRI E
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