Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Acid345_2693 |
Symbol | |
ID | 4071595 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Candidatus Koribacter versatilis Ellin345 |
Kingdom | Bacteria |
Replicon accession | NC_008009 |
Strand | + |
Start bp | 3184822 |
End bp | 3185451 |
Gene Length | 630 bp |
Protein Length | 209 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 637984710 |
Product | ECF subfamily RNA polymerase sigma-24 factor |
Protein accession | YP_591768 |
Protein GI | 94969720 |
COG category | [K] Transcription |
COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family [TIGR02985] RNA polymerase sigma-70 factor, Bacteroides expansion family 1 |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGAGACCA TCCAACCCAA AGTAGATGAG CCCATCAGCG AAGAGATGAG GCTCGTGAAC GCCGCCCGGG AAGGCGACGT TGGCGCATTC GAGGAACTGG TCCGGAAGTA CGATCGGAAC GTTTTTCGAA TTGCCAACCA CATCACGCAA AACCGCGAAG ACGCGGAAGA CGTGGTGCAG GATGCGTTCC TGAAGGCGTT CCAGAACCTG GGACAGTTCC AGGGGCAGTC GAAATTTTAT ACGTGGCTAG TACGCATCGC GGTCAATGAG GCCTTGATGC GGTTAAGGCG TCGCCGTCCG GAACGGATGG TGTCGCTGGA TGAAGATATC AACACGGGAG AGGACACCAT TCCGCGAGAA GTTGCGGACT GGGCACCGAA CCCGGAGCAG TTGTATAACC AAGCCGAACT GAAGGAAATT CTGCAGAAGA CGATTCAAGG ACTTCCGCCG AGCTTCCGGA CGGTGTTCGT GCTGCGTGAC GTTGAAGGGC TTTCGACGGA AGAGACCGCG GACGCTTTGA ATTTAAGCAT TCCGGCGGTA AAGTCGAGGC TGCTACGTGC ACGCTTGCAG TTGCGCGAGA GATTGACGAA GTACTTTAAA AAGCAGCGTG GTGGAGATGG AAAACAGTGA
|
Protein sequence | METIQPKVDE PISEEMRLVN AAREGDVGAF EELVRKYDRN VFRIANHITQ NREDAEDVVQ DAFLKAFQNL GQFQGQSKFY TWLVRIAVNE ALMRLRRRRP ERMVSLDEDI NTGEDTIPRE VADWAPNPEQ LYNQAELKEI LQKTIQGLPP SFRTVFVLRD VEGLSTEETA DALNLSIPAV KSRLLRARLQ LRERLTKYFK KQRGGDGKQ
|
| |