Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Acid345_2439 |
Symbol | |
ID | 4072873 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Candidatus Koribacter versatilis Ellin345 |
Kingdom | Bacteria |
Replicon accession | NC_008009 |
Strand | - |
Start bp | 2883702 |
End bp | 2885048 |
Gene Length | 1347 bp |
Protein Length | 448 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 637984455 |
Product | TPR repeat-containing protein |
Protein accession | YP_591514 |
Protein GI | 94969466 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.0207467 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.980065 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACTCAGA CCTCAATTAA ATTCGTTTCT CTCCCGTTCC TGTTGTTCGT GCTTATCACC GTTTTCACAT TGGCGGAGCC CAAGTCGCCC AACGCGAACA GCGCGGCCGA ACTCAACAAG CATGGTGAAG AGTTATTGGC GAAGCGCGAT TATCGCGGCG CGGTAAAACA GTTCAAGAAG GCGCTCACCG TCCAGTCCGA TTACGAACCT GCCGTTCGCA ATCTCGGAAC GGTAATGGAA GTCCTCGGCA AGGATGCGGA ATCGGAGACC GATCTCCAAA AAGCAATTCG GCTCGCTCCG GAAGACGCTG TCGCCCACAA TAGTCTCGGC CGCACCCTCT TTCACGAGGG CAAGTACGAG GATTCAGCGG GCTCCTATCG CAAGGCGATC GAGATTCACG ACGATTACGC CGAGGCCTAC AACGGACTGG GCGCAGCCTT GCTGAAGCTT GGCAAGACCG ATGAAGCCAT CGGCGCGTTC CAGTCTGCGG CCTCGAAAGA TCCGAAGAAT GTGGACGCTT TGAGCAATGC CGGCGCCGCG CTGCTGCACG CGCAGAAAGC GCAGGATGCG CTTCCGTATC TGGAGAAAGC TAAGGCGCTG AAGCCCGATG CGCCCGACGT CCTGGAGAAT TACGCCAACG CTTTGCAACA ACTCGGCCGC ACCAACGAAG CGATTACGGA ATATGAGAAG GCGCTCAAGG GCGATCCCAA GAGTGCCGTC GCGTGGGCGC AGTTAGGACA AACGCAGTAC GCCGCAAAGC AATATCCGGA AGCCGAAGTC AGCTTTAACA AGAGCCTCCA CCTCGATGCG CATCAACCGG AGGTGCTCTT CCTCCTCGGT GCGGCCTACA CCGAGCAGGG CAAGTCGAAA GAGGCGATGC ACTCTTACGA GAAGGGCCTT GCGCTGAAGC CCGACAACCC CGATGGCCTC TACAACCTCG GCCATGCGTA TGAGACGCAG AAGGAATATC CCAGGGCGAT TGATTCTTAC CAGAAGGCAC TCGCTGCTCG TCCGGAGTTC ACCCATGCAC TCGCCGGACT CGGCGCTTGC CAACTCGCTT CCAACAAACT CGATGATGCG ATTGCTACCT ATCGCAAGCT GGTTCCGATG CAATCCGACG ATCCTGGCAT TCGCTTCAAC TTCGCGACTG CGCTCTTCAA CAAAGGCAAT TTCAAGGAAG CGGCGGAGAA CTATCGCGAG GCCGTGAAGC TGAAACCGGA CTTCGCACAT GCCCACTACA ACCTCGGCAT GTCGCTTCTG CGCTTGAATG ACGCGGCGGG CGCCAAGTCG GAGTTTGAAG AAGCGCATCG CCTCGACGCC AGCCTGCAGA TCCCGAAGAC GAGCTGA
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Protein sequence | MTQTSIKFVS LPFLLFVLIT VFTLAEPKSP NANSAAELNK HGEELLAKRD YRGAVKQFKK ALTVQSDYEP AVRNLGTVME VLGKDAESET DLQKAIRLAP EDAVAHNSLG RTLFHEGKYE DSAGSYRKAI EIHDDYAEAY NGLGAALLKL GKTDEAIGAF QSAASKDPKN VDALSNAGAA LLHAQKAQDA LPYLEKAKAL KPDAPDVLEN YANALQQLGR TNEAITEYEK ALKGDPKSAV AWAQLGQTQY AAKQYPEAEV SFNKSLHLDA HQPEVLFLLG AAYTEQGKSK EAMHSYEKGL ALKPDNPDGL YNLGHAYETQ KEYPRAIDSY QKALAARPEF THALAGLGAC QLASNKLDDA IATYRKLVPM QSDDPGIRFN FATALFNKGN FKEAAENYRE AVKLKPDFAH AHYNLGMSLL RLNDAAGAKS EFEEAHRLDA SLQIPKTS
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